RetrogeneDB ID: | retro_etel_1631 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_284118:58382..58825(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000010479 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000001688 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 71.33 % |
Parental protein coverage: | 81.42 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MTTQGGLVANRGRRFKWAIELSGPGGSSRGRSDRGSGQGDSLYPVGYLDKQVPDTSVQETDRILVEKRCW |
MT.Q.G..ANRG..F.W.IELSGPGG.SRG.S...SGQGDSLYPVG.LDKQVPDTS.QETD.ILV.K.CW | |
Retrocopy | MTVQEGQMANRGWCF*WVIELSGPGGRSRG*ST*VSGQGDSLYPVGSLDKQVPDTSMQETDWILVDKCCW |
Parental | DIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPIQALMAISAT-FKMLESSSQKFLQGLVYLIG |
DI.L.PLKQIP.NLF.M.MAGNT.SIF.TM.V..MAW.PIQ.LM.ISAT.F...E..SQKFLQ.LVYLIG | |
Retrocopy | DITLRPLKQIPRNLFLMCMAGNTVSIFSTMTVYIMAWWPIQTLMVISAT<FQL-EN*SQKFLQSLVYLIG |
Parental | NLMGLALAVY |
N...L.LAV. | |
Retrocopy | NFVSLELAVH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005576 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000008407 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001688 | 1 retrocopy |
retro_etel_1631 ,
|
Felis catus | ENSFCAG00000001736 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004615 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003864 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006160 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000009190 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003824 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005719 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000516 | 1 retrocopy |