RetrogeneDB ID: | retro_fcat_759 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:65693386..65693692(-) | ||
Located in intron of: | ENSFCAG00000010488 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EMC4 | ||
Ensembl ID: | ENSFCAG00000001736 | ||
Aliases: | None | ||
Description: | ER membrane protein complex subunit 4 [Source:HGNC Symbol;Acc:28032] |
Percent Identity: | 65.38 % |
Parental protein coverage: | 54.01 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | LVANRGRRFKWAIELSGPGGGSRSRSDRGGGQGDSLYPVGYLDKQVPDTSVQETDRI-LVEKRC-WDIAL |
LVANRGR.FKWAIE.S.P.GGSRS.SD.G..QGDSLYP...LDKQVP.......DR.......C.W.IAL | |
Retrocopy | LVANRGRCFKWAIEPSRPAGGSRSQSDQGSSQGDSLYPDSCLDKQVPA*NQHARDRR>ILAEKCYWNIAL |
Parental | GPLKQIPMNLFIMYMAGNTISIFPTMMV-CMMAW |
.P.KQIPMNLFIM.MAGNT.SIFPT..V..M.AW | |
Retrocopy | CPFKQIPMNLFIM*MAGNTVSIFPTTVV<VMVAW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 21 .02 RPM |
SRP017611_liver | 0 .00 RPM | 11 .12 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005576 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000008407 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001688 | 1 retrocopy | |
Felis catus | ENSFCAG00000001736 | 1 retrocopy |
retro_fcat_759 ,
|
Macropus eugenii | ENSMEUG00000004615 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003864 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006160 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000009190 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003824 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005719 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000516 | 1 retrocopy |