RetrogeneDB ID: | retro_itri_1008 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393358.1:6033442..6033772(+) | ||
Located in intron of: | ENSSTOG00000002257 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EMC4 | ||
Ensembl ID: | ENSSTOG00000000516 | ||
Aliases: | None | ||
Description: | ER membrane protein complex subunit 4 [Source:HGNC Symbol;Acc:28032] |
Percent Identity: | 74.55 % |
Parental protein coverage: | 60.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MTAQGGLVANRGRRFKWAIELSGPGGGSRGRSDRGSSQGDSLYPVGYLDKQVPDTSVQETDRILVEKRCW |
.TAQGGLVA..G...KW.IELSGPGGGSR.RS...SSQ.DSL.PVGYLDKQVP.T.VQE.D.ILVEK..W | |
Retrocopy | ITAQGGLVAT*GQWLKWPIELSGPGGGSRDRSNHSSSQEDSLDPVGYLDKQVPNTRVQEIDWILVEKYYW |
Parental | DIALGPLKQIPMNLFIMYMAGNTISIFPTMMVCMMAWRPI |
.IALGP.KQIPM.LFIM..AGNTISIFP..MVCM.AW.PI | |
Retrocopy | VIALGPSKQIPMDLFIMHTAGNTISIFPDVMVCMAAWQPI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000005576 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000008407 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001688 | 1 retrocopy | |
Felis catus | ENSFCAG00000001736 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004615 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003864 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006160 | 4 retrocopies | |
Ochotona princeps | ENSOPRG00000009190 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000003824 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005719 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000516 | 1 retrocopy |
retro_itri_1008 ,
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