RetrogeneDB ID: | retro_etel_1645 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_285055:3539..3822(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAC3 | ||
Ensembl ID: | ENSETEG00000012902 | ||
Aliases: | None | ||
Description: | ras-related C3 botulinum toxin substrate 3 (rho family, small GTP binding protein Rac3) [Source:HGNC Symbol;Acc:9803] |
Percent Identity: | 62.89 % |
Parental protein coverage: | 52.78 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | TDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL-RDDKDAVERLRDKKLAPITY-PQG |
TD.FL.CFSL.SPA.FENV.AKWYP.V.HHCP..PILLVGTKLDL....KDA.E.L..K.L.PITY.P.G | |
Retrocopy | TDIFLLCFSLMSPAPFENVCAKWYPKVQHHCPQKPILLVGTKLDL<MEGKDAIEKLWVKHLVPITY<PSG |
Parental | LAMAREIGSVKYLECSALTQRGLKTVF |
.AMA..IG..KYL.C..LT.......F | |
Retrocopy | QAMA**IGFAKYLVCQVLTHETIRAMF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017364 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018194 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000013861 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004443 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012902 | 3 retrocopies |
retro_etel_1565, retro_etel_1645 , retro_etel_42,
|
Echinops telfairi | ENSETEG00000019234 | 3 retrocopies | |
Felis catus | ENSFCAG00000011671 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000006196 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012467 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000017151 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000009949 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008763 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000007272 | 4 retrocopies | |
Takifugu rubripes | ENSTRUG00000004543 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000016201 | 1 retrocopy |