RetrogeneDB ID: | retro_etel_672 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_14039:1447..1859(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000004738 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RHOQ | ||
Ensembl ID: | ENSETEG00000019234 | ||
Aliases: | None | ||
Description: | ras homolog family member Q [Source:HGNC Symbol;Acc:17736] |
Percent Identity: | 92.03 % |
Parental protein coverage: | 87.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DYDRLRPLSYPM-TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLND |
DYDRLR.LSYP..T.VFL.CFSVVNPASFQ.VKEEWVPELK.YAPNVPFLLIGTQIDLRDDP.TLARLND | |
Retrocopy | DYDRLRSLSYPK>TGVFLKCFSVVNPASFQLVKEEWVPELKDYAPNVPFLLIGTQIDLRDDPRTLARLND |
Parental | MKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAILTPKKHTVKKRIGSRCINCCLIT |
.KEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFD.A.IAILTPKKHTVKKRIGSRCINCCLIT | |
Retrocopy | IKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDGANIAILTPKKHTVKKRIGSRCINCCLIT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006082 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000549 | 3 retrocopies | |
Erinaceus europaeus | ENSEEUG00000015226 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000004443 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000012902 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000019234 | 3 retrocopies |
retro_etel_1468, retro_etel_596, retro_etel_672 ,
|
Felis catus | ENSFCAG00000015608 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001567 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013691 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015415 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000008439 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011892 | 1 retrocopy |