RetrogeneDB ID: | retro_etel_2120 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_66085:4546..5668(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000015372 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENO2 | ||
Ensembl ID: | ENSETEG00000007582 | ||
Aliases: | None | ||
Description: | enolase 2 (gamma, neuronal) [Source:HGNC Symbol;Acc:3353] |
Percent Identity: | 74.87 % |
Parental protein coverage: | 86.18 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | LGQGVLKAVDHINSTIAPALVSSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERD |
LG.GV..AV.HIN.TI.PALVS..L.V.EQE..D.LM.E.DGTENKSKFGANAILG.SL.VCKA.A.E.. | |
Retrocopy | LGKGVSQAVEHINTTIGPALVSKKLNVTEQEQIDKLMIEMDGTENKSKFGANAILGKSLTVCKARAVEKG |
Parental | LPLYRHIAQLAGNSDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIK |
.PLY.H.A.LAGN....LP.PAFNVINGGSHAGNKLAMQE.MILPV.A..F..AMR.GAEVYH.LK.VIK | |
Retrocopy | VPLYHHLADLAGNYEVVLPAPAFNVINGGSHAGNKLAMQELMILPVRAANFKEAMRIGAEVYHNLKNVIK |
Parental | DKYGKDATNVGDEGGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPPDP |
.KYGKDATNVGDEGGFAPNILEN.EALEL...AI.KAGYT.K.VI.MDVAASEF.R.GKY.LDFKSP.DP | |
Retrocopy | EKYGKDATNVGDEGGFAPNILENKEALELLMNAIGKAGYTDKVVIAMDVAASEFFRSGKYHLDFKSPDDP |
Parental | SRCITGDQLGSLYQDFVRNYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKAC |
...I..DQL..LY..F...YPVVSI.DPFDQDDW.AW.KF.A..GIQ.VGD.LTVTNPK.I..AV.EK.C | |
Retrocopy | RGYISPDQLADLYKSFITDYPVVSIKDPFDQDDWDAWAKFIASSGIQVVGDHLTVTNPK*IAKAVGEKSC |
Parental | NCLLLKVNQIGSVTEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKY |
NCLLLKVNQI.S.TE..QACKLAQ..GWG.MVSH.S.ETEDTFIADLVVGLCTGQIKTGAPCRSE.LAKY | |
Retrocopy | NCLLLKVNQISSSTESLQACKLAQSIGWGIMVSHCSRETEDTFIADLVVGLCTGQIKTGAPCRSECLAKY |
Parental | NQLMRIEEELGGEARFAGHNFRNP |
NQ..RIEEELG..A.FAG..FRNP | |
Retrocopy | NQILRIEEELGSKAKFAGQKFRNP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000014523 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007582 | 8 retrocopies |
retro_etel_1077, retro_etel_1696, retro_etel_1837, retro_etel_2120 , retro_etel_227, retro_etel_286, retro_etel_30, retro_etel_544,
|
Felis catus | ENSFCAG00000004282 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001774 | 1 retrocopy |