>retro_cfam_320
ATGTCTATTCTCAAGATCCACGCCAGGGAGATCTTTGACTCTCGCAGGAACCCCACTGCTGAGGTTGACCTCTACACCTC
CAAAGGTCTCTTCAGAGCTGCTGTGCCCAGTGGTGCCTCCACTGGTATCTATGAGGCCCTCAAGCTCCGGGACAATGACA
AGACACGCTACATGGGGAAAGGTGTCTCAAAGGCTGTTGAGCATATCAATAAAACTATTGCACCTGCCCTGATTAGCAAG
AAAGTGAACGTTGTGGAGCAGGAAAAGATTGACAAACTGATGATCGAGATGGATGGGACAGAGAATAAATCTAAATTTGG
TGCAAACGCCATTCTGGGAGTGTCCCTGGCTATCTGCAAGGCAGGGGCTGTTGAGAAGGGGGTGTCCCTGTACTGCCACA
TTGCTGATTTGGCTGGCAATTCTGAAGTTATCCTGCCAGTTCCGGCTTTCAATGTCATCAACGGTGGTTCCCATGCTGGC
AACAAGCTGGCCATGTAGGAGTTCATGATCCTTCCCATCGGTGCAGCGAACTTCAAGGAGGCCATGCGCATCGGAGCAGA
GGTTTATCATAACCTGAAGAATGTCATCAAGGAGAAATATGGAAAAGATGCCACCAATGTGGGCGATGAAGGTGGATTTG
CTCCTAATATCCTGGAGAACAAAGAAGCTCTGGAACTGCTGAAGAATGCCATCGGGAAGGCTGGCTACACCGATAAGGTG
GTCATCGGCATGGACGTAGCTGCTTCCGAGTTCTTCAGGTCTGGGAAGTATGACCTGGACTTCAAGTCCCCTGATGACCC
CAACAGGTACATCACGCCTGACCAGCTGGCTGACCTCTACAAGTCCTTCATCAGGGACTACCCAGTGGTATCTATCGAAG
ACCCCTTCGACCAGGATGACTGGGAAGCTTGGCAGAAGTTCACTGCCAGCGCTGGAATCCAGGTGGTGGGGGATGATCTC
ACCGTGACCAACCCAAAGCGGATTTCCAAGGCTGTGGGTGAGAAATCGTGCAACTGCCTCCTGCTTAAAGTGAACCAGAT
TGACTCTGTGACCGAGTCTCTTCAGGCGTGCAAACTGGCCCAGTCCAATGGGTGGGGCATCATGGTGTCGCATCGCTCCG
GGGAGACCGAAGATACTTTCATTGCTGACCTGGTGGTGGGACTCTGCACTGGGCAGATCAAGACGGGTGCACCATGCAGA
TCTGAGCGCTTGGCCAAGTACAACCAGATCCTCAGAATTGAAGAGGAATTGGGTAGCAAGGCCAAGTTTGCCGGCAGAAG
CTTCAGAAACCCC
ORF - retro_cfam_320 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
81.67 % |
Parental protein coverage: |
91.31 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MSIEKIWAREILDSRGNPTVEVDLHTAKGLFRAAVPSGASTGIYEALELRDGDKQRYLGKGVLKAVDHIN |
| MSI.KI.AREI.DSR.NPT.EVDL.T.KGLFRAAVPSGASTGIYEAL.LRD.DK.RY.GKGV.KAV.HIN |
Retrocopy | MSILKIHAREIFDSRRNPTAEVDLYTSKGLFRAAVPSGASTGIYEALKLRDNDKTRYMGKGVSKAVEHIN |
|
Parental | TTIAPALISSGLSVVEQEKLDNLMLELDGTENKSKFGANAILGVSLAVCKAGAAERDLPLYRHIAQLAGN |
| .TIAPALIS....VVEQEK.D.LM.E.DGTENKSKFGANAILGVSLA.CKAGA.E....LY.HIA.LAGN |
Retrocopy | KTIAPALISKKVNVVEQEKIDKLMIEMDGTENKSKFGANAILGVSLAICKAGAVEKGVSLYCHIADLAGN |
|
Parental | SDLILPVPAFNVINGGSHAGNKLAMQEFMILPVGAESFRDAMRLGAEVYHTLKGVIKDKYGKDATNVGDE |
| S..ILPVPAFNVINGGSHAGNKLAM.EFMILP.GA..F..AMR.GAEVYH.LK.VIK.KYGKDATNVGDE |
Retrocopy | SEVILPVPAFNVINGGSHAGNKLAM*EFMILPIGAANFKEAMRIGAEVYHNLKNVIKEKYGKDATNVGDE |
|
Parental | GGFAPNILENSEALELVKEAIDKAGYTEKIVIGMDVAASEFHRDGKYDLDFKSPADPSRYITGDQLGALY |
| GGFAPNILEN.EALEL.K.AI.KAGYT.K.VIGMDVAASEF.R.GKYDLDFKSP.DP.RYIT.DQL..LY |
Retrocopy | GGFAPNILENKEALELLKNAIGKAGYTDKVVIGMDVAASEFFRSGKYDLDFKSPDDPNRYITPDQLADLY |
|
Parental | QDFVRDYPVVSIEDPFDQDDWAAWSKFTANVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSV |
| ..F.RDYPVVSIEDPFDQDDW.AW.KFTA..GIQ.VGDDLTVTNPKRI..AV.EK.CNCLLLKVNQI.SV |
Retrocopy | KSFIRDYPVVSIEDPFDQDDWEAWQKFTASAGIQVVGDDLTVTNPKRISKAVGEKSCNCLLLKVNQIDSV |
|
Parental | TEAIQACKLAQENGWGVMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQLMRIEEELGDE |
| TE..QACKLAQ.NGWG.MVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQ..RIEEELG.. |
Retrocopy | TESLQACKLAQSNGWGIMVSHRSGETEDTFIADLVVGLCTGQIKTGAPCRSERLAKYNQILRIEEELGSK |
|
Parental | ARFAGHNFRNP |
| A.FAG..FRNP |
Retrocopy | AKFAGRSFRNP |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
52 .08 RPM |
336 .20 RPM |
SRP017611_brain |
41 .52 RPM |
813 .37 RPM |
SRP017611_kidney |
61 .68 RPM |
13 .87 RPM |
SRP017611_liver |
24 .87 RPM |
3 .92 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_320 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_320 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_320 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
13 retrocopies.