RetrogeneDB ID: retro_etel_973

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_193799:3671..4025(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: HEBP2
• Ensembl ID: ENSETEG00000009265
• Aliases: None
• Description: heme binding protein 2 [Source:HGNC Symbol;Acc:15716]

Sequence

>retro_etel_973
CCTGGAAGTTACAAGATCTGACACTACGGACCAGCCAAGTGGGTCAGCACCTCGGTTGAATCGATGGGCTGGGATTCAGC
CGTCCAGTCTGGCTTTAGATAACTCAACAGCTATGTTGGAGGCAAAAAAAATGAGAACAAGATGGAATTAAAGATGACAG
CTCCAGTGACAAGCTACGTGGAGCTATGTTCTGGCCATTTCAGTGGGTCTGCCATTAGCAATATACCTGTATAGCCCCTC
TGACCAGCAATTGATCCACCTAAGCCTTCGGAGCCAGAGGTCTCCATTGAAGACAGAGTCAAAATGACTGTGTTTGTAAG
GTTTTTCCACAGATTCTCTAGTGCCCCAAAGAAC

Alignment

ORF - retro_etel_973 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 68.33 %
• Parental protein coverage: 68.02 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PGSYEIRHYGPAKWVSTSVESMDWDSAVQAGFTKLNSYIEGKN-EKEMKIQMTAPVTSYVEPGSGPFSGS
          PGSY.I.HYGPAKWVSTSVESM.WDSAVQ.GF..LNSY..G...E..M...MTAPVTSYVE..SG.FSGS
Retrocopy PGSYKI*HYGPAKWVSTSVESMGWDSAVQSGFR*LNSYVGGXXXENKMELKMTAPVTSYVELCSGHFSGS

Parental  TIT-ISLYIPAEQQ-ADPPRPSESDVFIEDRAEMTVFVRSFDGFSSAQKN
          .I..I.LY.P..QQ..DPP.PSE..V.IEDR..MTVFVR.F..FSSA.KN
Retrocopy AIS>IYLYSPSDQQ<IDPPKPSEPEVSIEDRVKMTVFVRFFHRFSSAPKN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_973 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019060	1 retrocopy	retro_cjac_2727,
Dasypus novemcinctus	ENSDNOG00000008868	1 retrocopy	retro_dnov_1268,
Echinops telfairi	ENSETEG00000009265	1 retrocopy	retro_etel_973 ,
Homo sapiens	ENSG00000051620	1 retrocopy	retro_hsap_2333,
Gorilla gorilla	ENSGGOG00000001584	1 retrocopy	retro_ggor_1770,
Loxodonta africana	ENSLAFG00000013501	1 retrocopy	retro_lafr_752,
Otolemur garnettii	ENSOGAG00000005010	1 retrocopy	retro_ogar_2762,