RetrogeneDB ID: | retro_fcat_1048 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B4:80521870..80522219(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000004132 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.71 % |
Parental protein coverage: | 63.48 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EADRTLIYITLYI--SECLKKLQKCNSKSQGEKEMYTLGITNFPIPGEPGF-PLNAIYAKPANKQEDEVM |
EADR.L.Y.TL....S.CLK..QKC.SKS.GE.E..TLGI...P.PG.P.F.P.NA.YAK..NK.E.EVM | |
Retrocopy | EADRNLVYRTLHFGASWCLKEPQKCDSKSHGERETQTLGISSLPVPGNPVF<PFNAVYAKLVNKGEGEVM |
Parental | RAYLQQLRQETGLRL--CEKVFDPQNDKPSKWWTCFVKRQFMNK-SLSG |
RA...QLRQETGL.L...EK.FD.Q.DKPSKWWTCFVK.QF.N..SLSG | |
Retrocopy | RAHV*QLRQETGLWL*DAEKGFDLQDDKPSKWWTCFVKTQFLNR<SLSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 39 .02 RPM |
SRP017611_kidney | 0 .00 RPM | 62 .87 RPM |
SRP017611_liver | 0 .00 RPM | 29 .32 RPM |