RetrogeneDB ID: | retro_fcat_1169 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:35301885..35302305(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2V2 | ||
Ensembl ID: | ENSFCAG00000007602 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 variant 2 [Source:HGNC Symbol;Acc:12495] |
Percent Identity: | 87.14 % |
Parental protein coverage: | 96.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPE |
GVKVP.NFRLLEELEEGQKGVGDGTVSWGLE.DEDMTLTRWTGMIIG.PRT.Y.N.IYSLK.ECGPKYPE | |
Retrocopy | GVKVPCNFRLLEELEEGQKGVGDGTVSWGLEGDEDMTLTRWTGMIIGLPRTIYKN*IYSLKIECGPKYPE |
Parental | APPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN |
AP..VRFVTKINMNG.N.S.G.VD.R.I.VLAKWQNSYSIKVVLQELR.LMMSKENMKLPQPPEGQ.YNN | |
Retrocopy | APHFVRFVTKINMNGVNSSNGVVDLRAISVLAKWQNSYSIKVVLQELRSLMMSKENMKLPQPPEGQCYNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 18 .94 RPM |
SRP017611_kidney | 0 .21 RPM | 8 .14 RPM |
SRP017611_liver | 0 .10 RPM | 6 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000028827 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014413 | 4 retrocopies | |
Felis catus | ENSFCAG00000007602 | 6 retrocopies | |
Macropus eugenii | ENSMEUG00000016581 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002057 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000008223 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000010191 | 10 retrocopies | |
Mustela putorius furo | ENSMPUG00000001010 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000006933 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015720 | 27 retrocopies |
retro_tbel_1333, retro_tbel_1456, retro_tbel_1479, retro_tbel_1551, retro_tbel_160, retro_tbel_1740, retro_tbel_1784, retro_tbel_2129, retro_tbel_2149, retro_tbel_2317, retro_tbel_2334, retro_tbel_2496, retro_tbel_2890, retro_tbel_2935, retro_tbel_3021, retro_tbel_3102, retro_tbel_3141, retro_tbel_3461, retro_tbel_3573, retro_tbel_3734, retro_tbel_3935, retro_tbel_3971, retro_tbel_4227, retro_tbel_4319, retro_tbel_4720, retro_tbel_640, retro_tbel_909,
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