RetrogeneDB ID: | retro_mmul_1066 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:59426161..59426581(+) | ||
Located in intron of: | ENSMMUG00000020956 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2375 | ||
Ensembl ID: | ENSMMUG00000008223 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2 variant 2 [Source:RefSeq peptide;Acc:NP_001253772] |
Percent Identity: | 97.14 % |
Parental protein coverage: | 97.22 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPE |
GVKVP.NFRLLEELEEGQKGVGDGTVSWGLEDDEDMTL.RWTGMIIGPPRTNYENRIYSLKVE.GPKYPE | |
Retrocopy | GVKVPHNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLIRWTGMIIGPPRTNYENRIYSLKVEWGPKYPE |
Parental | APPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN |
A.PSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN | |
Retrocopy | ASPSVRFVTKINMNGINNSSGMVDARSIPVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQTYNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .22 RPM | 24 .88 RPM |
SRP007412_brain_prefrontal_cortex | 1 .35 RPM | 20 .78 RPM |
SRP007412_cerebellum | 0 .26 RPM | 17 .11 RPM |
SRP007412_heart | 0 .29 RPM | 8 .95 RPM |
SRP007412_kidney | 0 .23 RPM | 7 .63 RPM |
SRP007412_liver | 0 .08 RPM | 3 .21 RPM |
SRP007412_testis | 1 .02 RPM | 19 .86 RPM |