RetrogeneDB ID: | retro_fcat_1369 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C2:124280701..124280931(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRIPT | ||
Ensembl ID: | ENSFCAG00000015610 | ||
Aliases: | None | ||
Description: | cysteine-rich PDZ-binding protein [Source:HGNC Symbol;Acc:14312] |
Percent Identity: | 70.51 % |
Parental protein coverage: | 76.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | NTTESGGRKLNENKALTSKK-ARFDPYGKNKFSTCRICKSSVHQPGSHYCQGCAYKKGICAMCGKKVLDT |
.TTESG..KLN.NKALTSKK.AR.....KN.FST.R.CKSS.H.PGSH..QGCAYKKGI..M.GK.VLDT | |
Retrocopy | HTTESGKKKLNKNKALTSKK<ARNQSHRKNEFSTWRVCKSSLHYPGSHSWQGCAYKKGIRMMWGK*VLDT |
Parental | KNYKQTSV |
KNY..TSV | |
Retrocopy | KNYQKTSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 3 .21 RPM |
SRP017611_kidney | 0 .00 RPM | 5 .87 RPM |
SRP017611_liver | 0 .00 RPM | 1 .72 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000015723 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000002633 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000000556 | 7 retrocopies | |
Cavia porcellus | ENSCPOG00000008081 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000006085 | 1 retrocopy | |
Equus caballus | ENSECAG00000012342 | 2 retrocopies | |
Felis catus | ENSFCAG00000015610 | 1 retrocopy |
retro_fcat_1369 ,
|
Microcebus murinus | ENSMICG00000009133 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004193 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000005388 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000973 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000008089 | 6 retrocopies | |
Rattus norvegicus | ENSRNOG00000015215 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002853 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000000315 | 1 retrocopy |