RetrogeneDB ID: | retro_fcat_1416 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | D1:83567970..83568664(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000022568 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000007826 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 87.07 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MTTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFRRELEERERAA |
MTTAARPTFEPARGGR.KGEGDLSQLSKQYSSRDLPSHTKIKY.QTTQ.APEEVRNRD............ | |
Retrocopy | MTTAARPTFEPARGGRRKGEGDLSQLSKQYSSRDLPSHTKIKYTQTTQNAPEEVRNRDXXXXXXXXXXXX |
Parental | AREKNRDRPTREHTTSSSVSKKPRLDQIPAANLDADDPLTDEEDEDEDFEEESDDDDTAALLAELEKIKK |
.......RPTREHTTSSSVSKKPRLDQIPAANLDADDPLTDEEDEDEDFEEESDDDDTAALLAEL..... | |
Retrocopy | XXXXXXXRPTREHTTSSSVSKKPRLDQIPAANLDADDPLTDEEDEDEDFEEESDDDDTAALLAELXXXXX |
Parental | ERAEEQARKEQEQKAEEERIRMENILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVDD-QKKD |
ERAEEQARKEQEQKAEEERIRMENILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVD..QKKD | |
Retrocopy | ERAEEQARKEQEQKAEEERIRMENILSGNPLLNLTGPSQPQANFKVKRRWDDDVVFKNCAKGVDE>QKKD |
Parental | KRFVNDTLRSEFHKKFMEKYIK |
KRF.NDTLRSEFHKKFMEKYIK | |
Retrocopy | KRFGNDTLRSEFHKKFMEKYIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .34 RPM | 13 .20 RPM |
SRP017611_kidney | 0 .52 RPM | 20 .20 RPM |
SRP017611_liver | 0 .20 RPM | 10 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011392 | 1 retrocopy | |
Bos taurus | ENSBTAG00000007913 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004134 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000004188 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006249 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011075 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006649 | 1 retrocopy | |
Felis catus | ENSFCAG00000007826 | 1 retrocopy |
retro_fcat_1416 ,
|
Myotis lucifugus | ENSMLUG00000002032 | 3 retrocopies | |
Mus musculus | ENSMUSG00000004096 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000010404 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001629 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000001686 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000008490 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016534 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000000407 | 1 retrocopy |