RetrogeneDB ID: | retro_ocun_743 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 14:22058908..22059277(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CWC15 | ||
Ensembl ID: | ENSOCUG00000001629 | ||
Aliases: | None | ||
Description: | CWC15 spliceosome-associated protein homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:26939] |
Percent Identity: | 70.87 % |
Parental protein coverage: | 54.15 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | DDPLTDEEDEDFEEESDDDDTAALLAELEKIKKER-AEEQARKEQEQKAEEERIRMENILSG-NPLLNLT |
DDPLT.EEDEDF.EESDD.D...LLAELE...K...A..Q.RK.QEQKA.EER..ME.ILSG.NP.L.LT | |
Retrocopy | DDPLTGEEDEDFKEESDDGDSTVLLAELENNFKSE<ADKQTRK*QEQKAQEERSQMESILSG<NPFLHLT |
Parental | GPSQPQANFKVKRRWDDDVVFKNCA-KGVDDQKKDKRFVNDTLRSEFHKKFMEKYIK |
GPSQPQA.FK.KRR.DDDVVFKNCA..GVDDQKK.K.FV..TL.S.FHKKF..K.IK | |
Retrocopy | GPSQPQAHFKGKRRCDDDVVFKNCA<RGVDDQKKGKWFVSNTLQSRFHKKFL*KFIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 52 .37 RPM |
SRP017611_kidney | 0 .00 RPM | 56 .25 RPM |
SRP017611_liver | 0 .00 RPM | 12 .79 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011392 | 1 retrocopy | |
Bos taurus | ENSBTAG00000007913 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004134 | 6 retrocopies | |
Dipodomys ordii | ENSDORG00000011075 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006649 | 1 retrocopy | |
Felis catus | ENSFCAG00000007826 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002032 | 3 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000010404 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001629 | 4 retrocopies | |
Rattus norvegicus | ENSRNOG00000008490 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016534 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000000407 | 1 retrocopy |