RetrogeneDB ID: | retro_etel_647 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_126598:140..584(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000007973 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSETEG00000006649 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MTTAARPTFEPARGGR-GKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAPEEVRNRDFRRELEERERV |
MTTAA.PT.EPAR.GR.GK.E.D.S.LSK..S.RDLPSHT.IKYRQTTQDAPEEV.N..FRREL...... | |
Retrocopy | MTTAASPTAEPARDGRRGKRESDVSLLSKH*SNRDLPSHTQIKYRQTTQDAPEEVHNHGFRRELXXXXXX |
Parental | AAREKNRDR--PTREHTTSSSVSKKPRLDQIPAA-NLDADDPLTDEEDEDEDFEEESDDDDT-AALLAEL |
........R..PTRE.TTSSSVS...R....P.A...DA.......EDE..DFEE.SDDDDT..ALLA.. | |
Retrocopy | XXAAREKNRDLPTREQTTSSSVSGWTRF--LPPA>DADAPRMDEEVEDE--DFEEDSDDDDT<GALLAD* |
Parental | EKIKKERAEEQARK |
.KIK.ER.EEQARK | |
Retrocopy | KKIKEERGEEQARK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011392 | 1 retrocopy | |
Bos taurus | ENSBTAG00000007913 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004134 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000004188 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000006249 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011075 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000006649 | 1 retrocopy |
retro_etel_647 ,
|
Felis catus | ENSFCAG00000007826 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002032 | 3 retrocopies | |
Mus musculus | ENSMUSG00000004096 | 2 retrocopies | |
Ornithorhynchus anatinus | ENSOANG00000010404 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001629 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000001686 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000008490 | 3 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000016534 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000000407 | 1 retrocopy |