RetrogeneDB ID: retro_fcat_1424

Retrocopy location

• Organism: Cat (Felis catus)
• Coordinates: D1:105437270..105437760(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NOSIP
• Ensembl ID: ENSFCAG00000010497
• Aliases: None
• Description: nitric oxide synthase interacting protein [Source:HGNC Symbol;Acc:17946]

Sequence

>retro_fcat_1424
CCCAAGGCTGCCCCGGGGAATGGCCCAGAGGATGCCTGACAAGAGCCCAGTGCCGGCCTCGCAGACAAGGACAAAGCGCT
GTCTGGATTCCGTGGCAAATCCCAGAAGCTAAGGCCACCGACCCGTAGAAGCCTACACGCGCGCCTCGCTCCTGCCCCAT
GTCCGGGAAGCCAGTGCGCATGTCAGACCTGACGCGCATGCGCTTCACTCCGTTCGACGCCCTGTGGACTGCGTGGGGTT
CATCACGCGCAGTGAGCGCTGAGGGTGCCCTGGGACCCGCGACCGCCGAAGCGTCGGCACGCCTCGTGCAGTGTTCAGGT
CCTCTGGGGCCAGGGTCACCCTCGAGAGCCTGCAGAAGCTGGCTCGGAAGGACAGGGTGGACTTGTGAACTGGGAGAAGC
GACGTCATGGTGGTGCAGCGGAGCGGCATGGACTTGGCGGGCTCCGGAGTGAAGGCGGAGACCAAGAAGTCGAGGTCCAT
CTCGCCGGCC

Alignment

ORF - retro_fcat_1424 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.59 %
• Parental protein coverage: 55.48 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PETGPDDARPGASAGPTGKDKDK-ALPSFWIPSLTPEAKATKLEKPSRTV-TCPMSGKPLRMSDLTPVRF
          P...P......A...P.....DK......WIP...PEAKAT...KP.R....CPMSGKP.RMSDLT..RF
Retrocopy PKAAPGNGPEDA*QEPSAGLADK<GQSAVWIPWQIPEAKATDP*KPTRAPRSCPMSGKPVRMSDLTRMRF

Parental  TPLDS-SVDRVGLITRSERYVCAVTRDSLSNATPCAVLRPSGAVVTLECVEKLIRKDMVDPVNGEKLTDQ
          TP.D...VD.VG.ITRSER..C..TRD..S..TP.AV.R.SGA.VTLE...KL.RKD.VD...G......
Retrocopy TPFDA<PVDCVGFITRSER*GCPGTRDRRSVGTPRAVFRSSGARVTLESLQKLARKDRVDL*TGR----S

Parental  DIIVLQRGGTGFAGSGVKLQAEKSRPVMQA
          D..V.QR.G...AGSGVK....KSR....A
Retrocopy DVMVVQRSGMDLAGSGVKAETKKSRSISPA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP017611_brain	0.00 RPM	6.20 RPM
SRP017611_kidney	0.00 RPM	11.54 RPM
SRP017611_liver	0.00 RPM	4.45 RPM

ChIP-Seq

Felis catus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_fcat_1424 retrocopy.

TSS

Felis catus was not studied using FANTOM5 data.

Lab

retro_fcat_1424 was not experimentally validated.

Homology

Retrocopy orthology:

Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000010497	2 retrocopies	retro_fcat_1424 , retro_fcat_1471,
Macropus eugenii	ENSMEUG00000010446	1 retrocopy	retro_meug_837,
Myotis lucifugus	ENSMLUG00000017657	1 retrocopy	retro_mluc_2232,
Procavia capensis	ENSPCAG00000016030	1 retrocopy	retro_pcap_340,