RetrogeneDB ID: | retro_fcat_1424 | ||
Retrocopy location | Organism: | Cat (Felis catus) | |
| Coordinates: | D1:105437270..105437760(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NOSIP | ||
| Ensembl ID: | ENSFCAG00000010497 | ||
| Aliases: | None | ||
| Description: | nitric oxide synthase interacting protein [Source:HGNC Symbol;Acc:17946] |
Retrocopy-Parental alignment summary:
>retro_fcat_1424
CCCAAGGCTGCCCCGGGGAATGGCCCAGAGGATGCCTGACAAGAGCCCAGTGCCGGCCTCGCAGACAAGGACAAAGCGCT
GTCTGGATTCCGTGGCAAATCCCAGAAGCTAAGGCCACCGACCCGTAGAAGCCTACACGCGCGCCTCGCTCCTGCCCCAT
GTCCGGGAAGCCAGTGCGCATGTCAGACCTGACGCGCATGCGCTTCACTCCGTTCGACGCCCTGTGGACTGCGTGGGGTT
CATCACGCGCAGTGAGCGCTGAGGGTGCCCTGGGACCCGCGACCGCCGAAGCGTCGGCACGCCTCGTGCAGTGTTCAGGT
CCTCTGGGGCCAGGGTCACCCTCGAGAGCCTGCAGAAGCTGGCTCGGAAGGACAGGGTGGACTTGTGAACTGGGAGAAGC
GACGTCATGGTGGTGCAGCGGAGCGGCATGGACTTGGCGGGCTCCGGAGTGAAGGCGGAGACCAAGAAGTCGAGGTCCAT
CTCGCCGGCC
ORF - retro_fcat_1424 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 50.59 % |
| Parental protein coverage: | 55.48 % |
| Number of stop codons detected: | 4 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | PETGPDDARPGASAGPTGKDKDK-ALPSFWIPSLTPEAKATKLEKPSRTV-TCPMSGKPLRMSDLTPVRF |
| P...P......A...P.....DK......WIP...PEAKAT...KP.R....CPMSGKP.RMSDLT..RF | |
| Retrocopy | PKAAPGNGPEDA*QEPSAGLADK<GQSAVWIPWQIPEAKATDP*KPTRAPRSCPMSGKPVRMSDLTRMRF |
| Parental | TPLDS-SVDRVGLITRSERYVCAVTRDSLSNATPCAVLRPSGAVVTLECVEKLIRKDMVDPVNGEKLTDQ |
| TP.D...VD.VG.ITRSER..C..TRD..S..TP.AV.R.SGA.VTLE...KL.RKD.VD...G...... | |
| Retrocopy | TPFDA<PVDCVGFITRSER*GCPGTRDRRSVGTPRAVFRSSGARVTLESLQKLARKDRVDL*TGR----S |
| Parental | DIIVLQRGGTGFAGSGVKLQAEKSRPVMQA |
| D..V.QR.G...AGSGVK....KSR....A | |
| Retrocopy | DVMVVQRSGMDLAGSGVKAETKKSRSISPA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP017611_brain | 0 .00 RPM | 6 .20 RPM |
| SRP017611_kidney | 0 .00 RPM | 11 .54 RPM |
| SRP017611_liver | 0 .00 RPM | 4 .45 RPM |
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1424 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1424 was not experimentally validated.
Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 4 parental genes, and 5 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Felis catus | ENSFCAG00000010497 | 2 retrocopies |
retro_fcat_1424 , retro_fcat_1471,
|
| Macropus eugenii | ENSMEUG00000010446 | 1 retrocopy | |
| Myotis lucifugus | ENSMLUG00000017657 | 1 retrocopy | |
| Procavia capensis | ENSPCAG00000016030 | 1 retrocopy |