RetrogeneDB ID: retro_meug_837

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold20315:1648..2128(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NOSIP
• Ensembl ID: ENSMEUG00000010446
• Aliases: None
• Description: nitric oxide synthase interacting protein [Source:HGNC Symbol;Acc:17946]

Sequence

>retro_meug_837
CCGCGCGCAGGGGCCCAGCACAGTCACCAGGAGAAGGCCCAGGCGCTGCCCAGCTTCTGGATCCCATCTCTGACCCCAGA
AGCCAAGGCCGCGGAGCTGGAAAAGCCGTCGCGGATCGTGAGGTGCCCGATGTCCGGGAAACCCTTGCGCCTGTCAGACC
TCACCACGGTCCACTTCACGCCGGCGGACTGCCCAGCGGACAACGACAGGGTGGGGCAGGTCACGCGGAGGGAGCGCTAC
GTGTGCGCGGTCACGAAGGATGGCCTGAGCAACTTCACGCCGTGCGCTGTGCTGCGGCCGTCGGGGGCCGTGGTCACTCT
GAAGTGTGTGGAGCGCCTGATCCGCAGGGACATGGTGGACCCCATCAGCGGGGCCCCACTGACCGACATGGACATCATCC
CACTCCAGAGGGGCGGCACTGGCTTTGCGGCTTCTGGGGTGCAGCTGGAGGCGAAGAAGGCTCTCCCTGCGATGCAGGCC

Alignment

ORF - retro_meug_837 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.88 %
• Parental protein coverage: 52.84 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PNSGPEAGDKEKAKELPSFWIPSLTPEAKATKLEKPSRIVTCPMSGKPLRLSDLISVHFTPVD--GSVDR
          P..G......EKA..LPSFWIPSLTPEAKA..LEKPSRIV.CPMSGKPLRLSDL..VHFTP.D.....DR
Retrocopy PRAGAQHSHQEKAQALPSFWIPSLTPEAKAAELEKPSRIVRCPMSGKPLRLSDLTTVHFTPADCPADNDR

Parental  VGLITRSERYVCAVTRDSLSNSTPCAVLRPSGAVVTVECVERLIRKDMVDPISGVPLTDKDIILLQRGGT
          VG..TR.ERYVCAVT.D.LSN.TPCAVLRPSGAVVT..CVERLIR.DMVDPISG.PLTD.DII.LQRGGT
Retrocopy VGQVTRRERYVCAVTKDGLSNFTPCAVLRPSGAVVTLKCVERLIRRDMVDPISGAPLTDMDIIPLQRGGT

Parental  GFAGSGVQLEAKKSRPVMQA
          GFA.SGVQLEAKK..P.MQA
Retrocopy GFAASGVQLEAKKALPAMQA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_837 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_837 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000010497	2 retrocopies	retro_fcat_1424, retro_fcat_1471,
Macropus eugenii	ENSMEUG00000010446	1 retrocopy	retro_meug_837 ,
Myotis lucifugus	ENSMLUG00000017657	1 retrocopy	retro_mluc_2232,
Procavia capensis	ENSPCAG00000016030	1 retrocopy	retro_pcap_340,