RetrogeneDB ID: retro_mluc_2232

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430131:113714..114606(-)
• Located in intron of: ENSMLUG00000008237

Retrocopy information

• Ensembl ID: ENSMLUG00000026348
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000017657
• Aliases: None
• Description: None

Sequence

>retro_mluc_2232
GGCAAGAACTGCACAGCAGGGGCCATCTACACCTACCACGAGAAGAAGAAGGACACAGCAGCCTCAGGCTATGGGACCCA
GAATATTCGACTGAGCCGGGATGCTGTCAATGACTTCGACTGCTGCTGCCTCTCTCTGCAGCCCTGCCATGACCCCGTCG
TCACCCCGGACGGCTACCTGTATGAGCGCGAGGCCATCCCGGAGTACATTTTACATCAGAAGAAGGAGATCGCCCGGCAG
CTGAAGGCCTACGAGAAGCAGCGGGGCGCCCGGCGGGAGGAGCAGAAGGAGCTGCAGCGGGCAGCCACGCAGGACCAGGT
GCAGGGCTTCCTGGAGAAGGAGCGGCCATCGTGAGCCGGCCCCTCAACCCCTTCAAGCCCAAGGCTGCCTCGGGAAACGG
CCCAGGTGATGCCCAAGCCAGTCCCAGCGTCCGCCCCCCGCGGGCAAGGACAAGGACAAAATGCTGCCCTGCTTCTGGAT
CCCGTCGCTGACCCCCGAGGCCAAAGCCACCAAGCTGGAGAAGCCGTCAAACACCGTGACCTGCCCCATGTCCGGGAAGC
CGCTGCGCATGTACGACCTGACGCCGGTGCGGTTCACGCCTCTGGACAGCTCCGTGGACCGCGTGGGGCTCATCACGCGC
CGTGAGCGCTACGTGTGCGCGGTGACCCGGGACAGTCTGAGCAACGCCACGCCGTGCGCTGTGCTGCGTCCCTCGGGGGC
CGTGGTCACCCTGGAGTGTGTGGACAAGCTGATTCGGAAGGAGATGGTGGACTCTGTGAGCGGGGAGAAGCTCACAGACC
GCGACATCATCGTGCTGCAGCGGGGCGGCACGGGCTTCGCGGGCTCCAGAGTGACGCTGCAGGCAGAGAAGTCGCGGCCC
GTGATGCAGGCC

Alignment

ORF - retro_mluc_2232 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.39 %
• Parental protein coverage: 98.68 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GKNCTAGAVYTYHEKKKDTAASGYGTQNIRLSRDAVKDFDCCCLSLQPCHDPVVTPDGYLYEREAILEYI
          GKNCTAGA.YTYHEKKKDTAASGYGTQNIRLSRDAV.DFDCCCLSLQPCHDPVVTPDGYLYEREAI.EYI
Retrocopy GKNCTAGAIYTYHEKKKDTAASGYGTQNIRLSRDAVNDFDCCCLSLQPCHDPVVTPDGYLYEREAIPEYI

Parental  LHQKKEIARQLKAYEKQRGARREERKELQRAATQDQVRGFLEKE-AAIVSRPLNPFTPKAASGTGPDDAQ
          LHQKKEIARQLKAYEKQRGARREE.KELQRAATQDQV.GFLEKE.AAIVSRPLNPF.PKAASG.GP.DAQ
Retrocopy LHQKKEIARQLKAYEKQRGARREEQKELQRAATQDQVQGFLEKE<AAIVSRPLNPFKPKAASGNGPGDAQ

Parental  AGPSAAGP-AGKDKDKDKMLPSFWIPSLTPEAKATKLEKPSRTVTCPMSGKPLRMSDLTPVRFTPLDSSV
          A.PS...P.AGKDKDK..MLP.FWIPSLTPEAKATKLEKPS.TVTCPMSGKPLRM.DLTPVRFTPLDSSV
Retrocopy ASPSVRPP<AGKDKDK--MLPCFWIPSLTPEAKATKLEKPSNTVTCPMSGKPLRMYDLTPVRFTPLDSSV

Parental  DRVGLITRSERYVCAVTRDSLSNATPCAVLRPSGAVVTLECVEKLIRKDMVDPVNGEKLTDRDIIVLQRG
          DRVGLITR.ERYVCAVTRDSLSNATPCAVLRPSGAVVTLECV.KLIRK.MVD.V.GEKLTDRDIIVLQRG
Retrocopy DRVGLITRRERYVCAVTRDSLSNATPCAVLRPSGAVVTLECVDKLIRKEMVDSVSGEKLTDRDIIVLQRG

Parental  GTGFAGSGVKLQAEKSRPVMQA
          GTGFAGS.V.LQAEKSRPVMQA
Retrocopy GTGFAGSRVTLQAEKSRPVMQA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2232 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000010497	2 retrocopies	retro_fcat_1424, retro_fcat_1471,
Macropus eugenii	ENSMEUG00000010446	1 retrocopy	retro_meug_837,
Myotis lucifugus	ENSMLUG00000017657	1 retrocopy	retro_mluc_2232 ,
Procavia capensis	ENSPCAG00000016030	1 retrocopy	retro_pcap_340,