RetrogeneDB ID: | retro_fcat_1648 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:16512061..16512497(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | COPS8 | ||
Ensembl ID: | ENSFCAG00000013789 | ||
Aliases: | None | ||
Description: | COP9 signalosome subunit 8 [Source:HGNC Symbol;Acc:24335] |
Percent Identity: | 77.78 % |
Parental protein coverage: | 69.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | IKSANSELGGIWSVGQRIW-QRDFPGIYSTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSI-IAD |
I.S.NSELGGIWSVGQRIW..RDFPGIY.T.NAHQWSE.V.PI.EALRDAT.RRAF.LVSQAYTSI..A. | |
Retrocopy | IESVNSELGGIWSVGQRIW<ERDFPGIYMTFNAHQWSEMVWPIIEALRDATKRRAFTLVSQAYTSI>RAN |
Parental | DFAAFVGL-PVEEAVKGILEQGWQADSTTRM-VMPKKPVAGALDVSFNRFIPLSACAEPAPVPPIPNEQQ |
DFAA.V.L.PVEEAVKG.LEQGWQA..TTRM.VMPKKPVAGALDVSFN..IP.S...EPAP..PIPN.QQ | |
Retrocopy | DFAAVVRL<PVEEAVKGTLEQGWQAHFTTRM<VMPKKPVAGALDVSFNWIIPSS---EPAPITPIPNKQQ |
Parental | LARLTDYVAFLEN |
LARLT.YVAF... | |
Retrocopy | LARLTNYVAFIKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 16 .53 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .10 RPM |
SRP017611_liver | 0 .00 RPM | 5 .86 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000005854 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000030168 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000015309 | 5 retrocopies | |
Felis catus | ENSFCAG00000013789 | 1 retrocopy |
retro_fcat_1648 ,
|
Loxodonta africana | ENSLAFG00000008617 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000008189 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000007474 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000068 | 1 retrocopy | |
Mus musculus | ENSMUSG00000034432 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007341 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000013308 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019635 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000015944 | 1 retrocopy |