RetrogeneDB ID: | retro_dnov_1157 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_155938:3625..3945(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000015309 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 78.7 % |
Parental protein coverage: | 51.47 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QPIMEA--NATRRRAFTLVSQAYTSIIADDFAAFVGLPVEEAVKGILEQGWQADSTTRMVMPKKPVAGAL |
QPIMEA...ATRR.AFTLVSQAYTS.I.D.FAA...LP.EE.VKGILEQGWQADSTTRMVM.KK..AGAL | |
Retrocopy | QPIMEALRGATRR*AFTLVSQAYTSRITDNFAAIARLPAEEDVKGILEQGWQADSTTRMVMLKKWDAGAL |
Parental | DVSFNRFIPLLEP-APVPPIPNEQQLARLTDYVAFLEN |
.VSFNRFIPLLEP.APVPPIP.EQ...RLTD..AFLEN | |
Retrocopy | EVSFNRFIPLLEP<APVPPIPSEQRPVRLTDFMAFLEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 11 .28 RPM |
SRP012922_cerebellum | 0 .00 RPM | 24 .47 RPM |
SRP012922_heart | 0 .23 RPM | 9 .75 RPM |
SRP012922_kidney | 0 .00 RPM | 8 .49 RPM |
SRP012922_liver | 0 .00 RPM | 4 .80 RPM |
SRP012922_lung | 0 .00 RPM | 10 .54 RPM |
SRP012922_quadricep_muscle | 0 .17 RPM | 12 .98 RPM |
SRP012922_spleen | 0 .00 RPM | 12 .71 RPM |