RetrogeneDB ID: | retro_fcat_1666 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | E1:23133345..23133654(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LZIC | ||
Ensembl ID: | ENSFCAG00000023559 | ||
Aliases: | None | ||
Description: | leucine zipper and CTNNBIP1 domain containing [Source:HGNC Symbol;Acc:17497] |
Percent Identity: | 81.9 % |
Parental protein coverage: | 50.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QPGQLRTRLAEMDRDLMVGKLERGLYTQQKVEILTALRKLGEKLTADDEA-FLSANAGAILSQFEKVSTD |
.PG.L.TR.A.MD.DLM.GKLERGLYTQ.KVEIL.ALRKL.EKLTADDEA.FLSA.AGA.LSQFEKVSTD | |
Retrocopy | EPGPLQTR*AGMDGDLMAGKLERGLYTQDKVEILAALRKLREKLTADDEA<FLSAHAGATLSQFEKVSTD |
Parental | LGSGDKVLALASFEVEKT-KNDMVWKLGTLITFLL |
LG.GDKVLALAS.E.EKT.K.DMVW.LGTLITFLL | |
Retrocopy | LGFGDKVLALASSEFEKT>KHDMVWNLGTLITFLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 47 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 67 .40 RPM |
SRP017611_liver | 0 .00 RPM | 34 .98 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004171 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000011633 | 1 retrocopy | |
Felis catus | ENSFCAG00000023559 | 1 retrocopy |
retro_fcat_1666 ,
|
Mustela putorius furo | ENSMPUG00000016545 | 2 retrocopies |