RetrogeneDB ID: retro_mputfur_524

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896917.1:9642369..9642669(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LZIC
• Ensembl ID: ENSMPUG00000016545
• Aliases: None
• Description: leucine zipper and CTNNBIP1 domain containing [Source:HGNC Symbol;Acc:17497]

Sequence

>retro_mputfur_524
AACCAGGCCTTTTAAACCCCAGAGGTCATCAGATTACTTGAAAGAAACAAACAGGTCAGCTTCAGACAAGGTTAGCAGAG
ATGGATAGAGATCTCGTGGTGGTAAAGCTGGAAAGAGGCCTCTACTCTCAACAGAAAGGGGGAGATACTAACAGCTCTCA
GGACATGTGGAGGGAAGCTGAGTACAGATGGCGAGGCCTTCTTGTCAGCAAATGCAGCTGCTCTACTTGGCCAGTTTGAG
AAAGTATCTCCAGACCTTGGCTCTGGAGACAAGGTTCTTGCATTGGCAAGCTCTGAGGTT

Alignment

ORF - retro_mputfur_524 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.47 %
• Parental protein coverage: 52.63 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  SQAFKTPEVIRLFA-KKQPGQLRTRLAEMDRDLMVGKLDRGLYMQQKV-EILTALRKLGEKLTADDEAFL
          .QAF.TPEVIRL...KKQ.GQL.TRLAEMDRDL.V.KL.RGLY.QQK..EILTALR..G.KL..D.EAFL
Retrocopy NQAF*TPEVIRLLE<KKQTGQLQTRLAEMDRDLVVVKLERGLYSQQKG>EILTALRTCGGKLSTDGEAFL

Parental  SANAGAILSQFEKVSTDLGSGDKVLALASFEV
          SANA.A.L.QFEKVS.DLGSGDKVLALAS.EV
Retrocopy SANAAALLGQFEKVSPDLGSGDKVLALASSEV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_524 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_524 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000004171	2 retrocopies	retro_amel_1330, retro_amel_1820,
Echinops telfairi	ENSETEG00000011633	1 retrocopy	retro_etel_686,
Felis catus	ENSFCAG00000023559	1 retrocopy	retro_fcat_1666,
Mustela putorius furo	ENSMPUG00000016545	2 retrocopies	retro_mputfur_336, retro_mputfur_524 ,