RetrogeneDB ID: retro_mputfur_336

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896904.1:8459786..8460247(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: LZIC
• Ensembl ID: ENSMPUG00000016545
• Aliases: None
• Description: leucine zipper and CTNNBIP1 domain containing [Source:HGNC Symbol;Acc:17497]

Sequence

>retro_mputfur_336
GAGACCAGAGAGGAACTTGATGTATATGAATAGGAAGAAACCAATAAAGGAAACTCGGGAGCAACTAAGCCACTTTAATG
ATGTCACTGAAGAAAATCATGTCTGGAAATATGACTCCAGTAGACGAGCCAAGTGGAATGCAACTGCCATCCAGGCGGCT
GTCAGCCAGGCCATTAAGACCCCACACATCATCTGATTACTTGCAGAGAAATGGTCGGGTCGGTTCCAGACAAGGTGAGT
GGAGATGGATGGAGATCTCATGGTAGAGAAGATGGAAAGAGACCTGAACGCCCAACAGAAAGTGGAGATACTAAGTGCTC
TCAGGACACTTGGAGAAAAGCTGACTGCGATCATGAGGCCCTCTTATCAGCAAACACAAGTCTCCCCTCAGCCAGTCTGA
GAAAGTCTCTACAGACCTTGGCTCTGGAGGCAAACTTCTGGCACTGACAAGTTCTGATGTT

Alignment

ORF - retro_mputfur_336 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.18 %
• Parental protein coverage: 81.05 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  ECREELDTDEYEETKK-ETLEQLSEFND-SLKKIMSGNMTLVDELSGMQL-AIQAAISQAFKTPEVIRLF
          E.REELD..E.EET.K.ET.EQLS.FND.SLKKIMSGNMT.VDE.SGMQL.AIQAA.SQA.KTP..I.L.
Retrocopy ETREELDVYE*EETNK>ETREQLSHFND>SLKKIMSGNMTPVDEPSGMQL<AIQAAVSQAIKTPHII*LL

Parental  AKKQPGQLRTRLAEMDRDLMVGKLDRGLYMQQKVEILTALRKLGEKLTA-DDEAFLSANAG-AILSQFEK
          A.K..G...TR..EMD.DLMV.K..R.L..QQKVEIL.ALR.LGEKLTA.D.EA.LSAN.....LSQ.EK
Retrocopy AEKWSGRFQTR*VEMDGDLMVEKMERDLNAQQKVEILSALRTLGEKLTA<DHEALLSANTS<SPLSQSEK

Parental  VSTDLGSGDKVLALASFEV
          VSTDLGSG.K.LAL.S..V
Retrocopy VSTDLGSGGKLLALTSSDV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_336 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_336 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000004171	2 retrocopies	retro_amel_1330, retro_amel_1820,
Echinops telfairi	ENSETEG00000011633	1 retrocopy	retro_etel_686,
Felis catus	ENSFCAG00000023559	1 retrocopy	retro_fcat_1666,
Mustela putorius furo	ENSMPUG00000016545	2 retrocopies	retro_mputfur_336 , retro_mputfur_524,