RetrogeneDB ID: | retro_fcat_1752 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | F1:36567242..36567404(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PET100 | ||
Ensembl ID: | ENSFCAG00000023931 | ||
Aliases: | None | ||
Description: | PET100 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:40038] |
Percent Identity: | 74.07 % |
Parental protein coverage: | 69.86 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | IANQAEWFEDYVIQRKRELWPPEK---RRELEEFKERIRKQREEKLLRAARQSS |
I..QA.WF.D.VIQ.KRELWPPEK...R.ELEEFKERI.KQ.EEKLLRAA..SS | |
Retrocopy | IQRQAVWFDD*VIQHKRELWPPEKGDQR*ELEEFKERIGKQKEEKLLRAAQ*SS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 8 .03 RPM |
SRP017611_kidney | 0 .00 RPM | 6 .80 RPM |
SRP017611_liver | 0 .00 RPM | 3 .54 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008524 | 2 retrocopies | |
Equus caballus | ENSECAG00000008451 | 1 retrocopy | |
Felis catus | ENSFCAG00000023931 | 2 retrocopies |
retro_fcat_1266, retro_fcat_1752 ,
|
Gorilla gorilla | ENSGGOG00000027594 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000039245 | 1 retrocopy |