RetrogeneDB ID: | retro_fcat_1889 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | JH409055.1:67350..67922(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNOT7 | ||
Ensembl ID: | ENSFCAG00000000591 | ||
Aliases: | None | ||
Description: | CCR4-NOT transcription complex, subunit 7 [Source:HGNC Symbol;Acc:14101] |
Percent Identity: | 77.2 % |
Parental protein coverage: | 67.02 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | EFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQDSIELLTTSGIQ |
EFR..ADYQYQLL..NVD.L.I..L.LTFMNEQ.EYPP.TSTW.FNFKFNL.E.MY.QDSI..L.TSGI. | |
Retrocopy | EFRRKADYQYQLLQYNVDFLNISWLELTFMNEQREYPPTTSTW*FNFKFNLMEYMYSQDSIVILKTSGIH |
Parental | FKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLF-FPV |
F.K.EE.GIET.YF.ELLMTSGVVLC.GVKWL.FHSGYDFGYLIKILTNSNLPEEELDFFEIL.LF.F.. | |
Retrocopy | F*KREE-GIETHYFTELLMTSGVVLCKGVKWL*FHSGYDFGYLIKILTNSNLPEEELDFFEILQLF>FLI |
Parental | IYDVKYLMKS-CKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE |
IYDVKY..K...KNLKGGL.E.A.QL.LE.IGPQHQAGSD.L.TGM.F.KMRE | |
Retrocopy | IYDVKYSLKN>AKNLKGGLWEAAQQLQLELIGPQHQAGSD*LFTGMTFLKMRE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 43 .50 RPM |
SRP017611_kidney | 0 .00 RPM | 24 .84 RPM |
SRP017611_liver | 0 .00 RPM | 17 .08 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000677 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000011795 | 1 retrocopy | |
Felis catus | ENSFCAG00000000591 | 1 retrocopy |
retro_fcat_1889 ,
|
Homo sapiens | ENSG00000198791 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000001873 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000017972 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002489 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000014589 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000006324 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000018385 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000011828 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000009175 | 2 retrocopies |