RetrogeneDB ID: | retro_fcat_337 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A2:97515632..97515983(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000029444 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.5 % |
Parental protein coverage: | 97.5 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MMSGRPGRVPLQFLPDEARSLPPPKLTDPRLVYMGFLGYCSGLIDNAIRRRPVVTAGLHRQLLYVTSFVF |
MMS.RPG.VP..FL..E..SLP.P.LTD..LV...FLG...GLIDNAI..R.VV.A.LH.QLLYVTSFVF | |
Retrocopy | MMSRRPGKVP**FLLHED*SLPQPRLTDLWLVHSCFLGDYFGLIDNAIWQRLVVSASLHCQLLYVTSFVF |
Parental | IGYYLLKRQDYMYAVKDHDMFAYVKSHPEDFPEKDKKTYGDFLEEFH |
IGY.LLK.Q.Y.YAVKDH.MF.YVKSHPEDFPEKDKKTYG.FLEEFH | |
Retrocopy | IGYDLLKHQEYIYAVKDHGMFTYVKSHPEDFPEKDKKTYGEFLEEFH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 22 .27 RPM |
SRP017611_kidney | 0 .00 RPM | 36 .28 RPM |
SRP017611_liver | 0 .00 RPM | 30 .12 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Felis catus | ENSFCAG00000029444 | 1 retrocopy |
retro_fcat_337 ,
|
Mus musculus | ENSMUSG00000030647 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000958 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007154 | 1 retrocopy |