RetrogeneDB ID:

retro_ttru_1263

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_109011:33484..33841(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTTRG00000007154
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ttru_1263
ATGATGAATGGCCGGCCGGGCCGAGTGCCCTTACAGTTCCTGCCGAATGAGGCCCGGAGCCTGCCGCCGCCCAAGCTAAC
CGACCCGCGGCTCTTCTACGTCGGCTTCTTGGGTTACTGCTCCGACCTGATTGATAGCGCGATCCGGCGGCGGCCGGTGG
TGTCGGCCGGTTTGCATCGCCAGCTTCTATATGTTACTTCCTTTATTTTTGTCGGATATTATCTTTTAAAACGTCAAGAC
TGTATGTGTGCTCTGAGGGACCATGATATGTTTGCATATGTAAAGTCACATCCAGAGGATTTTCCTGAAAAAGATAAGAA
AACTTACGGTAAAATTCTTGAAGAATTCCATCCAGTG

ORF - retro_ttru_1263 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 94.96 %
Parental protein coverage: 99.17 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMMNGRPGRVPLQFLPNEARSLPPPKLTDPRLFYVGFLGYCSGLIDNAIRRRPVASAGLHRQLLYVTSFIF
MMNGRPGRVPLQFLPNEARSLPPPKLTDPRLFYVGFLGYCS.LID.AIRRRPV.SAGLHRQLLYVTSFIF
RetrocopyMMNGRPGRVPLQFLPNEARSLPPPKLTDPRLFYVGFLGYCSDLIDSAIRRRPVVSAGLHRQLLYVTSFIF
ParentalVGYYLLKRQDCMCALRDHDMFAYEKSHPEDFPEKDKKTYSKILEEFYPV
VGYYLLKRQDCMCALRDHDMFAY.KSHPEDFPEKDKKTY.KILEEF.PV
RetrocopyVGYYLLKRQDCMCALRDHDMFAYVKSHPEDFPEKDKKTYGKILEEFHPV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1263 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1263 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species Parental gene accession Retrocopies number
Felis catus ENSFCAG000000294441 retrocopy
Mus musculus ENSMUSG000000306472 retrocopies
Oryctolagus cuniculus ENSOCUG000000009581 retrocopy
Tursiops truncatus ENSTTRG00000007154 1 retrocopy
retro_ttru_1263 ,



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