RetrogeneDB ID:

retro_fcat_448

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:A3:109383251..109383448(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000003611
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_448
GGGACTCACTATTTCCACAAGAATACCTGGACCAGGGAGCCAGTGCTGGATGTGTCCTGCACCATCAGAGGCCACGCTAG
AATTCTGCCCCCACCGAGCCCCTTCGCCAAGTAGCCACCATCACCAACCCGGCCATAACCTACAACTATCCAGTGCCCCT
CTGAGATGATGGGAACATGACCCATGTGCCCGGCCAC

ORF - retro_fcat_448 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 58.21 %
Parental protein coverage: 78.57 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalGLTAFLKDVWAKEPVLVASFTIAGLAVILPTISPFTK-YATMINQATPYNYPVPLRDDGNMPDVPSH
G...F.K..W..EPVL..S.TI.G.A.ILP..SPF.K..AT..N.A..YNYPVPL.DDGNM..VP.H
RetrocopyGTHYFHKNTWTREPVLDVSCTIRGHARILPPPSPFAK<VATITNPAITYNYPVPL*DDGNMTHVPGH

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 9 .64 RPM
SRP017611_kidney 0 .00 RPM 23 .39 RPM
SRP017611_liver 0 .00 RPM 10 .51 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_448 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_448 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 19 parental genes, and 62 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000077542 retrocopies
Canis familiaris ENSCAFG000000027034 retrocopies
Callithrix jacchus ENSCJAG000000185185 retrocopies
Cavia porcellus ENSCPOG000000219371 retrocopy
Equus caballus ENSECAG000000158973 retrocopies
Felis catus ENSFCAG00000003611 6 retrocopies
Gorilla gorilla ENSGGOG000000236502 retrocopies
Loxodonta africana ENSLAFG000000180142 retrocopies
Macropus eugenii ENSMEUG000000029392 retrocopies
Monodelphis domestica ENSMODG000000041181 retrocopy
Mustela putorius furoENSMPUG000000103173 retrocopies
Mus musculus ENSMUSG000000356743 retrocopies
Otolemur garnettii ENSOGAG0000000693110 retrocopies
Pan troglodytes ENSPTRG000000288905 retrocopies
Pteropus vampyrus ENSPVAG000000155605 retrocopies
Rattus norvegicus ENSRNOG000000142241 retrocopy
Sarcophilus harrisii ENSSHAG000000090162 retrocopies
Sus scrofa ENSSSCG000000032613 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000253772 retrocopies



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