RetrogeneDB ID: | retro_rnor_104 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 2:229588549..229588804(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000050514 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ndufa3 | ||
Ensembl ID: | ENSRNOG00000014224 | ||
Aliases: | None | ||
Description: | Protein LOC684509 [Source:UniProtKB/TrEMBL;Acc:F1M8L6] |
Percent Identity: | 96.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAARISAFLKNAWAKEPVLVVSFTVWGLAIIMPMISPYTQYASMINKATPYNYPVPVRDNGNMPDVPSHP |
MAARISAFLKNAWAKEPVLVVSFTVWGLA.IMPMISPYT.YASMINKATPYNYPVPVRDNGNMPDVPSHP | |
Retrocopy | MAARISAFLKNAWAKEPVLVVSFTVWGLAVIMPMISPYTKYASMINKATPYNYPVPVRDNGNMPDVPSHP |
Parental | QEPLGPSLEWLKNL |
QEPLGPSLEW.KNL | |
Retrocopy | QEPLGPSLEWIKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 23 .73 RPM |
SRP017611_kidney | 0 .21 RPM | 53 .87 RPM |
SRP017611_liver | 0 .00 RPM | 24 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007754 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000002703 | 4 retrocopies | |
Callithrix jacchus | ENSCJAG00000018518 | 5 retrocopies | |
Cavia porcellus | ENSCPOG00000021937 | 1 retrocopy | |
Equus caballus | ENSECAG00000015897 | 3 retrocopies | |
Felis catus | ENSFCAG00000003611 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000023650 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000018014 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000002939 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000004118 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010317 | 3 retrocopies | |
Mus musculus | ENSMUSG00000035674 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000006931 | 10 retrocopies | |
Pan troglodytes | ENSPTRG00000028890 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000015560 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000014224 | 1 retrocopy |
retro_rnor_104 ,
|
Sarcophilus harrisii | ENSSHAG00000009016 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000003261 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000025377 | 2 retrocopies |