RetrogeneDB ID: | retro_fcat_487 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A3:82509188..82509446(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDA1 | ||
Ensembl ID: | ENSFCAG00000001001 | ||
Aliases: | None | ||
Description: | DET1 and DDB1 associated 1 [Source:HGNC Symbol;Acc:28360] |
Percent Identity: | 81.4 % |
Parental protein coverage: | 82.69 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ADFLKGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQWDKKNAAKK |
ADF.KGL.VYNKSNFSRFHADSVCKASNR.P.VYLP..E.P..QIIVTEK.NILL.YLHQQWDKKNA... | |
Retrocopy | ADFFKGLTVYNKSNFSRFHADSVCKASNRHPLVYLPMWEHPFDQIIVTEKINILLCYLHQQWDKKNANE* |
Parental | RDQEQVDLEGESSAPP |
RDQEQVDLEGES.A.P | |
Retrocopy | RDQEQVDLEGESWATP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 6 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 2 .58 RPM |
SRP017611_liver | 0 .00 RPM | 1 .72 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017068 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000031251 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000006944 | 1 retrocopy | |
Felis catus | ENSFCAG00000001001 | 1 retrocopy |
retro_fcat_487 ,
|
Homo sapiens | ENSG00000130311 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005802 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001763 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003990 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016231 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005738 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003701 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009710 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010668 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000039417 | 1 retrocopy |