RetrogeneDB ID: | retro_hsap_1409 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 14:45356639..45356944(-) | ||
Located in intron of: | ENSG00000258633 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000258509 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DDA1 | ||
Ensembl ID: | ENSG00000130311 | ||
Aliases: | DDA1, C19orf58, PCIA1 | ||
Description: | DET1 and DDB1 associated 1 [Source:HGNC Symbol;Acc:28360] |
Percent Identity: | 88.35 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MADFLKGLPVYNKSNFSRFHADSVCKASNRRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQW-DKKNAA |
MADFLKGLPVYNKSNFSRFH.DSVCKASN.RPSVYLPTREYPSEQIIVTEKTNILLRYLHQQW.DKKNAA | |
Retrocopy | MADFLKGLPVYNKSNFSRFHGDSVCKASNQRPSVYLPTREYPSEQIIVTEKTNILLRYLHQQW<DKKNAA |
Parental | KKRDQEQVELEGESSAPPRKVARTDSPDMHEDT |
KK.DQEQVELEGE.SAP.RK.A.T.SP...EDT | |
Retrocopy | KKEDQEQVELEGETSAPLRKLALTHSPEIQEDT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 17 .37 RPM |
bodymap2_adrenal | 0 .00 RPM | 22 .13 RPM |
bodymap2_brain | 0 .00 RPM | 17 .72 RPM |
bodymap2_breast | 0 .00 RPM | 14 .44 RPM |
bodymap2_colon | 0 .00 RPM | 10 .19 RPM |
bodymap2_heart | 0 .00 RPM | 13 .24 RPM |
bodymap2_kidney | 0 .00 RPM | 14 .44 RPM |
bodymap2_liver | 0 .00 RPM | 11 .81 RPM |
bodymap2_lung | 0 .00 RPM | 15 .98 RPM |
bodymap2_lymph_node | 0 .00 RPM | 25 .89 RPM |
bodymap2_ovary | 0 .00 RPM | 13 .01 RPM |
bodymap2_prostate | 0 .02 RPM | 18 .72 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 8 .55 RPM |
bodymap2_testis | 0 .00 RPM | 24 .92 RPM |
bodymap2_thyroid | 0 .04 RPM | 13 .95 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 21 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_966 |
Gorilla gorilla | retro_ggor_1093 |
Pongo abelii | retro_pabe_1167 |
Macaca mulatta | retro_mmul_2248 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000017068 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000031251 | 3 retrocopies | |
Cavia porcellus | ENSCPOG00000006944 | 1 retrocopy | |
Felis catus | ENSFCAG00000001001 | 1 retrocopy | |
Homo sapiens | ENSG00000130311 | 1 retrocopy |
retro_hsap_1409 ,
|
Gorilla gorilla | ENSGGOG00000005802 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000001763 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003990 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016231 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005738 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000003701 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009710 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000010668 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000039417 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .03 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |