RetrogeneDB ID: | retro_fcat_55 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | X:37015090..37015699(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSFCAG00000010772 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP1R2 | ||
Ensembl ID: | ENSFCAG00000024749 | ||
Aliases: | None | ||
Description: | protein phosphatase 1, regulatory (inhibitor) subunit 2 [Source:HGNC Symbol;Acc:9288] |
Percent Identity: | 50.25 % |
Parental protein coverage: | 95.61 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAASTASHRPIKGILKNKSSTTSSVVASAEQPGRSVDEELSKKSQKWDEMNILATYHPADKDYGLMKIDE |
..AS.AS.RPIKGILKNK.ST.SSVV.S..Q......E...KK.QKWD..NILAT..PA...Y..MKI.E | |
Retrocopy | VTASSASRRPIKGILKNKRSTVSSVVVSTQQSRGVIPEVQRKKTQKWDQLNILATSRPAYRNYDFMKINE |
Parental | PSTPYHSMVGDDEDALSDSETTEALTPDILAKKLAAAEGSEPKYRVHEQESSEDEDSDLSPEEQEKKRQF |
PS...H....DDED...D.E..EA.TPDI.AKK.AA...SE....V.E.E......S........K...F | |
Retrocopy | PSS-HHLGRADDEDLVNDPEGKEAMTPDISAKKPAATDTSEFIRQVGEPENDGAHGSRIFLNRRVKQQKF |
Parental | EMKRKLHYNEGLNIKLARQLISKD-LHDDEEDEEMSETVAEECMNVEQSNQGSTTSD |
..KRKLHYN.GLNIK..R..ISKD.L.DD..DEE......E.....E.S..GSTT.. | |
Retrocopy | TLKRKLHYNKGLNIKVSRKIISKDFLYDD--DEETPPSNHEASTAAEDSHEGSTTDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 73 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .62 RPM |
SRP017611_liver | 0 .00 RPM | 18 .70 RPM |