RetrogeneDB ID: | retro_fcat_594 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:184694558..184695196(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000007862 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.35 % |
Parental protein coverage: | 62.57 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | DALNIETAIKTKGVDEVTIVNILTNRSNEQRQDIAFAYQRRTKKELTSALKSALSGHLET-VILGLLKTP |
DALNIE.A..TKGVDE.TIVNILT..S..QR.D..F.YQRRTKKEL..ALKSALSGHLET..I.GLLKTP | |
Retrocopy | DALNIEMAVRTKGVDEITIVNILTSCSS*QR*DTTFTYQRRTKKELAFALKSALSGHLET<MIWGLLKTP |
Parental | AQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAK |
AQYDAS.LKAS..GLGT.E.S.IEIICSRTN.ELQEI..VYKE..KTDLEKDIISDTSGDFRKLMVALAK | |
Retrocopy | AQYDASDLKAST*GLGTEEASFIEIICSRTN*ELQEISKVYKETNKTDLEKDIISDTSGDFRKLMVALAK |
Parental | GRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVCHLQKVFDRYKSYSPYDMLESIKK |
GRRAE.GSVID.ELIDQDA.D.YDAGVKRKGTDVP.WIS.MTE.SV..............PYD.LE..KK | |
Retrocopy | GRRAEYGSVIDHELIDQDAQDRYDAGVKRKGTDVPEWISVMTEQSVSSPESI-*QVQELQPYDTLERLKK |
Parental | EVKGD |
EVKG. | |
Retrocopy | EVKGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 15 .49 RPM |
SRP017611_kidney | 0 .21 RPM | 124 .08 RPM |
SRP017611_liver | 0 .00 RPM | 84 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000008055 | 2 retrocopies | |
Bos taurus | ENSBTAG00000009615 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000016686 | 3 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012143 | 3 retrocopies | |
Equus caballus | ENSECAG00000012670 | 1 retrocopy | |
Felis catus | ENSFCAG00000007862 | 2 retrocopies |
retro_fcat_594 , retro_fcat_709,
|
Macropus eugenii | ENSMEUG00000008980 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000002464 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000011604 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000762 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000009952 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000011401 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001276 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003719 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000007705 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000007888 | 2 retrocopies |