RetrogeneDB ID:

retro_fcat_594

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B1:184694558..184695196(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000007862
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_594
GATGCTCTGAACATTGAAATGGCCGTCAGGACCAAAGGTGTGGATGAGATCACCATTGTCAACATTTTGACCAGCTGCAG
CAGTTAACAGAGATAGGATACTACCTTCACCTACCAGAGAAGGACCAAAAAGGAACTTGCATTTGCACTGAAGTCAGCCT
TGTCTGGCCACCTGGAGACATGATTTGGGGCCTATTGAAAACACCTGCTCAGTATGATGCTTCTGACTTGAAAGCCTCCA
CGTAGGGGCTGGGGACTGAGGAGGCCTCCTTTATTGAGATCATCTGCTCAAGGACCAACTGAGAGCTTCAAGAAATTAGC
AAAGTCTACAAGGAAACCAACAAGACTGATCTGGAGAAGGACATCATTTCTGACACATCTGGTGACTTCCGCAAGCTGAT
GGTTGCCCTTGCAAAAGGAAGAAGAGCAGAGTATGGCTCTGTCATTGACCATGAACTGATTGACCAAGATGCCCAGGATC
GCTATGATGCTGGAGTGAAGAGGAAAGGAACTGATGTGCCCGAGTGGATCAGTGTCATGACGGAGCAGAGTGTGTCCTCT
CCAGAAAGTATTTGACAGGTACAGGAGCTACAGCCCTATGACACATTGGAGAGGCTCAAGAAGGAGGTCAAAGGAGAA

ORF - retro_fcat_594 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.35 %
Parental protein coverage: 62.57 %
Number of stop codons detected: 5
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalDALNIETAIKTKGVDEVTIVNILTNRSNEQRQDIAFAYQRRTKKELTSALKSALSGHLET-VILGLLKTP
DALNIE.A..TKGVDE.TIVNILT..S..QR.D..F.YQRRTKKEL..ALKSALSGHLET..I.GLLKTP
RetrocopyDALNIEMAVRTKGVDEITIVNILTSCSS*QR*DTTFTYQRRTKKELAFALKSALSGHLET<MIWGLLKTP
ParentalAQYDASELKASMKGLGTDEDSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFRKLMVALAK
AQYDAS.LKAS..GLGT.E.S.IEIICSRTN.ELQEI..VYKE..KTDLEKDIISDTSGDFRKLMVALAK
RetrocopyAQYDASDLKAST*GLGTEEASFIEIICSRTN*ELQEISKVYKETNKTDLEKDIISDTSGDFRKLMVALAK
ParentalGRRAEDGSVIDYELIDQDARDLYDAGVKRKGTDVPKWISIMTERSVCHLQKVFDRYKSYSPYDMLESIKK
GRRAE.GSVID.ELIDQDA.D.YDAGVKRKGTDVP.WIS.MTE.SV..............PYD.LE..KK
RetrocopyGRRAEYGSVIDHELIDQDAQDRYDAGVKRKGTDVPEWISVMTEQSVSSPESI-*QVQELQPYDTLERLKK
ParentalEVKGD
EVKG.
RetrocopyEVKGE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 15 .49 RPM
SRP017611_kidney 0 .21 RPM 124 .08 RPM
SRP017611_liver 0 .00 RPM 84 .92 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_594 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_594 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 16 parental genes, and 29 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000080552 retrocopies
Bos taurus ENSBTAG000000096152 retrocopies
Canis familiaris ENSCAFG000000166863 retrocopies
Choloepus hoffmanni ENSCHOG000000121433 retrocopies
Equus caballus ENSECAG000000126701 retrocopy
Felis catus ENSFCAG00000007862 2 retrocopies
retro_fcat_594 , retro_fcat_709,
Macropus eugenii ENSMEUG000000089803 retrocopies
Myotis lucifugus ENSMLUG000000024643 retrocopies
Monodelphis domestica ENSMODG000000116041 retrocopy
Mustela putorius furoENSMPUG000000007622 retrocopies
Otolemur garnettii ENSOGAG000000099521 retrocopy
Pteropus vampyrus ENSPVAG000000114011 retrocopy
Tupaia belangeri ENSTBEG000000012761 retrocopy
Tarsius syrichta ENSTSYG000000037191 retrocopy
Tursiops truncatus ENSTTRG000000077051 retrocopy
Vicugna pacos ENSVPAG000000078882 retrocopies



Copyright © RetrogeneDB 2014-2017