RetrogeneDB ID: | retro_fcat_647 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B1:121786550..121787425(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000022091 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.56 % |
Parental protein coverage: | 65.4 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | DDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGREIV |
DDSFN.FFSE.GAGK.V...VF.DLEPTV...V.TGTY.QLFHP.QLITGKE.AANN.A.G.YT.G.EI. | |
Retrocopy | DDSFNIFFSEVGAGKCVRKVVFIDLEPTVIGDVYTGTYCQLFHPGQLITGKENAANNHAQGQYTTGKEII |
Parental | DLVLDRIRKLADLCTGLQGFLIFHSFGGTGSGFASLLMER-LSVDYGK-SKLEFAIYPAPQVSTAVVEPY |
DL.LD.I.K.A...TG.Q..L.FH.FGG........L.......DYGK.SKLEF.IYP..QVSTAVVEP. | |
Retrocopy | DLILD*IQKVANKHTGVQDILVFHGFGGGTGSAFTSLLME<ITIDYGKKSKLEFSIYPIHQVSTAVVEPC |
Parental | NS-ILTTHTTLEHSDCAFMVDN-EAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLT |
NS...TTH.TLEHSDCAFM.D..E.IYDIC.RN.DIE.P.YTNLN..I..IVSS.TA.LRFDGALN..LT | |
Retrocopy | NS<LFTTHVTLEHSDCAFMIDK<ETIYDICHRNIDIECPNYTNLNCFISRIVSSVTAFLRFDGALN--LT |
Parental | EFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSV-AEITNACFEP-AQMVKCDPRHGKYMACCMLYRGD |
EFQT.LV.YP.IHFPLA.YA.VIS.EK.YHEQ.S..AE.T....EP..QMVKCDP.HGKYMACC.LY.GD | |
Retrocopy | EFQTRLVSYPHIHFPLAIYALVISTEKTYHEQSSE<AETTSM*VEPESQMVKCDPHHGKYMACCLLYHGD |
Parental | VVPKDVNAAIATIKTKRTI |
VVPKDV.AAIAT.KTK... | |
Retrocopy | VVPKDVSAAIATNKTKHPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .10 RPM | 0 .10 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000011042 | 2 retrocopies | |
Equus caballus | ENSECAG00000014403 | 1 retrocopy | |
Felis catus | ENSFCAG00000022091 | 2 retrocopies |
retro_fcat_1375, retro_fcat_647 ,
|
Felis catus | ENSFCAG00000024852 | 1 retrocopy | |
Felis catus | ENSFCAG00000027011 | 1 retrocopy | |
Felis catus | ENSFCAG00000027277 | 1 retrocopy | |
Felis catus | ENSFCAG00000028689 | 3 retrocopies | |
Mus musculus | ENSMUSG00000067338 | 1 retrocopy |