Parental gene:

TUBA1C, ENSFCAG00000024852

Aliases:None
Description:tubulin, alpha 1c [Source:HGNC Symbol;Acc:20768]
Organism:Cat (Felis catus)
Coordinates:B4:78722452..78726726(+)


>ENSFCAG00000024852
CAGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCTGGTGTTCAGATCGGCAATGCCTGCTGGGAGCTCTATTGCCTGGA
ACACGGCATCCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGGAGATGACTCCTTCAACACCTTCTTCA
GTGAGACGGGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAACCCACAGTCATTGATGAAGTTCGCACT
GGCACCTACCGCCAGCTCTTCCATCCTGAGCAGCTCATCACGGGCAAGGAAGATGCTGCCAATAACTATGCCCGAGGGCA
CTACACCATCGGCAAGGAGATCATCGACCTTGTCTTGGACCGAATTCGGAAACTGNCAGACTTGGAGTCTGGTATCCAGA
TGACTCTACTCCTGAGGCATGTGGGCAGCTTGCCTGGCCACAACTGGTCTAGTCTAAAAAGAATGACTTTGCATCATTCA
CAGCTTCATACTTTTCCAGATGCTTATCACACCCTTCCTAGCAAAAGTATGGACCCACAGGAGAAGTACAGTGAGGGATT
GGTAGAGAATTCCACAAATCGCACTTCTGAGAAGTGCCTTCATGGTAGACACGAGGCCATCTATGACATCTGTCGTAGAA
ACCTCGATATCGAACGCCCAACCTACACTAACCTTAACCGCCTTATTAGCCAGATTGTGTCTTCCATCACTGCTTCCCTC
AGATTTGATGGAGCCCTGAATGTGGATCTGACAGAATTCCAGACCAACCTGGTGCCCTATCCCCGCATCCACTTCCCTCT
GGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACAGCTTACTGTAGCAGAGATCACCAATGCGTGCT
TTGAGCCAGCCAACCAGATGGTGAAATGCGACCCTCGCCATGGTAAATACATGGCTTGCTGCCTGTTGTACCGTGGTGAT
GTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAGCGTACCATCCAGTTCGTGGACTGGTGCCCCAC
TGGCTTCAAAGTTGGCATTAATTACCAGCCTCCCACTGTGGTACCTGGTGGAGACCTGGCCAAAGTACAGCGAGCTGTGT
GCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCCAAGCGT
GCCTTTGTTCACTGGTATGTGGGTGAGGGCATGGAGGAAGGAGAGTTTTCTGAGGCCCGTGAGGACATGGCTGCCCTTGA
GAAGGATTATGAGGAGGTTGGAGCAGATAGTGCTGAGGGAGAGGATGAGGGTGAAGAGTATTAA

Library Parental gene expression (RPM)
SRP017611_liver 2 .93 RPM
SRP017611_kidney 40 .71 RPM
SRP017611_brain 3 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000039992 possible_ortholog 1 retrogene
retro_btau_840,
Canis familiaris ENSCAFG00000008661 ortholog_one2one 2 retrogenes
retro_cfam_960, retro_cfam_978,
Choloepus hoffmanni ENSCHOG00000008444 possible_ortholog 2 retrogenes
retro_chof_179, retro_chof_360,
Equus caballus ENSECAG00000009504 possible_ortholog 1 retrogene
retro_ecab_1041,
Erinaceus europaeus ENSEEUG00000004068 ortholog_one2one 1 retrogene
retro_eeur_669,
Felis catus ENSFCAG00000022091 within_species_paralog 2 retrogenes
retro_fcat_1375, retro_fcat_647,
Felis catus ENSFCAG00000027011 within_species_paralog 1 retrogene
retro_fcat_588,
Felis catus ENSFCAG00000027277 within_species_paralog 1 retrogene
retro_fcat_596,
Felis catus ENSFCAG00000028689 within_species_paralog 3 retrogenes
retro_fcat_1802, retro_fcat_254, retro_fcat_798,
Macropus eugenii ENSMEUG00000010779 possible_ortholog 2 retrogenes
retro_meug_1648, retro_meug_2174,
Mus musculus ENSMUSG00000043091 possible_ortholog 1 retrogene
retro_mmus_843,
Oryctolagus cuniculus ENSOCUG00000028032 possible_ortholog 1 retrogene
retro_ocun_111,
Otolemur garnettii ENSOGAG00000009435 possible_ortholog 1 retrogene
retro_ogar_240,
Pteropus vampyrus ENSPVAG00000004646 possible_ortholog 1 retrogene
retro_pvam_929,
Rattus norvegicus ENSRNOG00000015544 possible_ortholog 3 retrogenes
retro_rnor_1193, retro_rnor_2260, retro_rnor_960,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_361 56.39 99.55
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Download FASTA sequences of all ENSFCAG00000024852 retrocopies