RetrogeneDB ID: | retro_fcat_714 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:78208921..78209460(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TDGF1 | ||
Ensembl ID: | ENSFCAG00000014508 | ||
Aliases: | None | ||
Description: | teratocarcinoma-derived growth factor 1 [Source:HGNC Symbol;Acc:11701] |
Percent Identity: | 68.82 % |
Parental protein coverage: | 96.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | ERLSCSVILILAI-SKAFEPEFAAAAGLGHPRELARPPQGDPAWRDNGLRSLEEPAIRHRSLQLVPSLGI |
E..SCSVI.I.AI.SKAFE.EF.AA..L.H.RELA.P....PA.RD....S.EEP.I.H.S.Q.V.S.GI | |
Retrocopy | EHFSCSVIFIMAI<SKAFELEFVAA--LSH-RELACPSRENPALRDDCNWSQEEPSIHHWSFQFVLSIGI |
Parental | QDSKELNRTCCLNGGTCMLGSFCACPP-SFYGRNCEHDSRKENCESVPHGAWLPRRCSICKCWHGRLHCF |
QDSKEL..TCCLNGGT.MLG.F.ACPP.SF.G.NCE.DS.K.NCESVPH..WL..R.S.CKCW.G.LHCF | |
Retrocopy | QDSKELKKTCCLNGGTYMLGCFFACPP<SFCGWNCEYDSHKDNCESVPHDTWLSKRRSMCKCWCGQLHCF |
Parental | PQTFLPGCDGHVMDEHFLVSRTPELA-PSSGITFSLAVICLAMQSY |
PQTFLPGC..HVMDEHFLVSRTPEL...S.G.TF.LA.ICLA.QSY | |
Retrocopy | PQTFLPGCEAHVMDEHFLVSRTPELI>ASLGTTFLLAGICLAIQSY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .00 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .10 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000002174 | 3 retrocopies | |
Felis catus | ENSFCAG00000014508 | 1 retrocopy |
retro_fcat_714 ,
|
Homo sapiens | ENSG00000241186 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003453 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000009140 | 4 retrocopies | |
Microcebus murinus | ENSMICG00000016492 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003088 | 6 retrocopies | |
Mustela putorius furo | ENSMPUG00000015167 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032494 | 3 retrocopies | |
Nomascus leucogenys | ENSNLEG00000006143 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000017039 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000014854 | 7 retrocopies | |
Tarsius syrichta | ENSTSYG00000013609 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000017299 | 1 retrocopy |