Parental gene:

TDGF1, ENSPTRG00000014854

Aliases:None
Description:teratocarcinoma-derived growth factor 1 [Source:HGNC Symbol;Acc:11701]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:3:47269364..47274229(+)


>ENSPTRG00000014854
ATGGACTGCAGGAAGATGGCCCGCTTCTCTTACAGTGTGATTTGGATCATGGCCATTTCTAAAGCCTTTGAACTGGGATT
AGTTGCCGGGCTGGGCCATCAGGAATTTGCTCGTCCATCTCGGGGAGACCTGGCCTTCAGAGATGACAGCATTTGGCCCC
AGGAGGAGCCTGCAATTCGGCCTCGGTCTTCCCAGCGTGTGCCGCCCATGGGGATACAGCACAGTAAGGAGCTAAACAGA
ACCTGCTGCCTGAATGGGGGAACCTGCATGCTGGGGTCCTTTTGTGCCTGCCCTCCCTCCTTCTACGGACGGAACTGTGA
GCACGATGTGCGCAAAGAGAACTGTGGGTCTGTGCCCCATGACACCTGGCTGCCCAAGAAGTGTTCCCTGTGTAAATGCT
GGCACGGTCAGCTCCGCTGCTTTCCTCAGGCATTTCTACCCGGCTGCGATGGCCTTGTGATGGATGAGCACCTCGTGGCT
TCCAGGACTCCAGAACTACCACTGTCTGCACGTACTACCACTTTTATGCTAGTTGGCATCTGCCTTTCTATACAAAGCTA
CTATTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 0 .43 RPM
SRP007412_cerebellum 0 .14 RPM
SRP007412_heart 0 .03 RPM
SRP007412_kidney 1 .10 RPM
SRP007412_liver 5 .70 RPM
SRP007412_testis 0 .11 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002174 ortholog_one2one 3 retrogenes
retro_cjac_1594, retro_cjac_4151, retro_cjac_938,
Felis catus ENSFCAG00000014508 ortholog_one2one 1 retrogene
retro_fcat_714,
Homo sapiens ENSG00000241186 ortholog_one2one 7 retrogenes
retro_hsap_1999, retro_hsap_2393, retro_hsap_2709, retro_hsap_3415, retro_hsap_3956, retro_hsap_4737, retro_hsap_4804,
Gorilla gorilla ENSGGOG00000003453 ortholog_one2one 5 retrogenes
retro_ggor_1447, retro_ggor_1815, retro_ggor_2307, retro_ggor_2943, retro_ggor_2990,
Loxodonta africana ENSLAFG00000009140 ortholog_one2one 4 retrogenes
retro_lafr_1037, retro_lafr_1067, retro_lafr_757, retro_lafr_871,
Microcebus murinus ENSMICG00000016492 ortholog_one2one 1 retrogene
retro_mmur_635,
Macaca mulatta ENSMMUG00000003088 ortholog_one2one 6 retrogenes
retro_mmul_1744, retro_mmul_2290, retro_mmul_2560, retro_mmul_742, retro_mmul_770, retro_mmul_967,
Mustela putorius furo ENSMPUG00000015167 ortholog_one2one 1 retrogene
retro_mputfur_961,
Mus musculus ENSMUSG00000032494 ortholog_one2one 3 retrogenes
retro_mmus_1429, retro_mmus_1544, retro_mmus_1908,
Nomascus leucogenys ENSNLEG00000006143 ortholog_one2one 6 retrogenes
retro_nleu_1649, retro_nleu_2124, retro_nleu_2179, retro_nleu_2317, retro_nleu_2519, retro_nleu_535,
Otolemur garnettii ENSOGAG00000017039 ortholog_one2one 1 retrogene
retro_ogar_2611,
Tarsius syrichta ENSTSYG00000013609 ortholog_one2one 2 retrogenes
retro_tsyr_295, retro_tsyr_574,
Tursiops truncatus ENSTTRG00000017299 ortholog_one2one 1 retrogene
retro_ttru_441,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_1333 83.11 77.13
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2. retro_ptro_1749 85.52 77.13
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3. retro_ptro_1831 74.64 71.81
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4. retro_ptro_2319 72.67 78.19
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5. retro_ptro_2685 88.18 58.51
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6. retro_ptro_3153 97.81 72.87
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7. retro_ptro_3194 72.22 66.49
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Download FASTA sequences of all ENSPTRG00000014854 retrocopies