RetrogeneDB ID: | retro_fcat_749 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B2:25225604..25226105(-) | ||
Located in intron of: | ENSFCAG00000014628 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCD2 | ||
Ensembl ID: | ENSFCAG00000007037 | ||
Aliases: | None | ||
Description: | programmed cell death 2 [Source:HGNC Symbol;Acc:8762] |
Percent Identity: | 67.25 % |
Parental protein coverage: | 66.27 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | LDRTIPDHNFLFPEFEIVIETEDEITPEVVEKENESEIIGSMGEVPEEELDSMAKHESREDKIFQKFKTK |
LD...PD..FLF..FEIVIETED.ITPEVV.K....EIIGS.GE..E.ELDS.AKHESRE.KIFQKFK.. | |
Retrocopy | LDS*VPDSHFLF*GFEIVIETEDGITPEVVGKGDVAEIIGSVGEAHEKELDSTAKHESREEKIFQKFKPT |
Parental | IALEP-EQVLRYGRGIAP-IWISGENIPQEKDIPDCPCGAKRIFEFQVMPQLLNYLKADTLGRSVD-WGV |
IA.E.....LR..R...P.IWI.GENIP.EK.IPDCPC.AKR.FEFQ.MPQ.L.YL.AD.LGRSVD..G. | |
Retrocopy | IAFES>DKILRDWRKCCP>IWIPGENIPPEKGIPDCPCSAKRVFEFQAMPQQLSYLEADILGRSVD<LGR |
Parental | VAVFTCAESCRLGIGYTEEFV-WKQDITDTP |
.A....A.SCRLG.GYTEEFV..KQD.TDTP | |
Retrocopy | LAGLPGAQSCRLGSGYTEEFV<MKQDVTDTP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 10 .79 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .38 RPM |
SRP017611_liver | 0 .00 RPM | 9 .10 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017075 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000020634 | 1 retrocopy | |
Equus caballus | ENSECAG00000016819 | 1 retrocopy | |
Felis catus | ENSFCAG00000007037 | 2 retrocopies |
retro_fcat_305, retro_fcat_749 ,
|
Homo sapiens | ENSG00000071994 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028229 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000007474 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019916 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000007227 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000295 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000014002 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017193 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018828 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010822 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025312 | 2 retrocopies |