Parental gene:

ENSSSCG00000025312

Aliases:None
Description:Sus scrofa programmed cell death 2 (PDCD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001244352]
Organism:Pig (Sus scrofa)
Coordinates:GL894396.1:863..5133(+)


>ENSSSCG00000025312
GTTTTTAGAAATCAGCTCCCCAGGAGAAATGACTTCTACTCCTTTGAACCACCTTCTGAGGATCCTCCCCCAGAGACAGG
AGAATCCCTGAGCCTGCAGCTCAAGTCTGGTGCTCATCTCTGCAGGGTTTGTGGCTGTTTAGGCCCCAAAACGTGCTCCA
GATGTCACCAGGCACATTATTGCAGTAAGGAGCATCAGGCACTGGACTGGAGATCAGGACATAAGCAGGCTTGTGCACAA
CCAGATAATTTGGACAATACAATTCCAGACCACAACTTCCTTTTTCCAGAATTTGAAATTGTAATAGAAACAGAAGATGA
GATTATGCCTGAGGTTGTAGAGAAAGAAGATGAATCAGAGATTATAGGGAGCATGGGTGAAGCATCTGAGGAAGAATTGG
ATTCCATGGCAAAGCATGAATCTAGAGAAGATAGAATTTTCCAGAAGTTTAAAACTAAAATATCCCTTGAACCAGAACAG
ATTCTCAGATACGGCAGAGGGGTTGCCCCCATCTGGATCTCTGCTGAAAATATTCCTCAAGAAAAGGATATTCCAGATTG
CCCCTGTGGTGCCAAGAGAATATTTGAATTCCAGGTCATGCCTCAGCTGCTCAACTACCTGAAGGCTGACAGGCTGGGCA
GGAGTGTTGACTGGGGCGTCCTGGCCGTCTTCACCTGTGCTGAAAGCTGTGGATTGGGCGCTGGCTACACAGAGGAATTT
GTCTGGAAGCAAGATCTACTAGACACAGCTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 7 .03 RPM
SRP014902_testis 7 .64 RPM
SRP018856_adipose 5 .62 RPM
SRP018288_kidney 21 .28 RPM
SRP018288_lung 14 .97 RPM
SRP018288_liver 15 .51 RPM
SRP018288_heart 10 .01 RPM
SRP035408_liver 23 .48 RPM
SRP035408_brain 34 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017075 ortholog_one2many 2 retrogenes
retro_amel_1329, retro_amel_1404,
Callithrix jacchus ENSCJAG00000020634 ortholog_many2many 1 retrogene
retro_cjac_3946,
Cavia porcellus ENSCPOG00000002920 possible_ortholog 1 retrogene
retro_cpor_168,
Equus caballus ENSECAG00000016819 ortholog_one2many 1 retrogene
retro_ecab_533,
Felis catus ENSFCAG00000007037 ortholog_one2many 2 retrogenes
retro_fcat_305, retro_fcat_749,
Homo sapiens ENSG00000071994 ortholog_one2many 1 retrogene
retro_hsap_4305,
Gorilla gorilla ENSGGOG00000028229 ortholog_one2many 2 retrogenes
retro_ggor_2876, retro_ggor_899,
Microcebus murinus ENSMICG00000007474 ortholog_one2many 1 retrogene
retro_mmur_108,
Macaca mulatta ENSMMUG00000019916 ortholog_many2many 1 retrogene
retro_mmul_1137,
Mustela putorius furo ENSMPUG00000007227 ortholog_one2many 2 retrogenes
retro_mputfur_621, retro_mputfur_707,
Nomascus leucogenys ENSNLEG00000000295 ortholog_one2many 2 retrogenes
retro_nleu_1458, retro_nleu_2633,
Otolemur garnettii ENSOGAG00000014002 ortholog_one2many 2 retrogenes
retro_ogar_2090, retro_ogar_2288,
Pongo abelii ENSPPYG00000017193 ortholog_many2many 2 retrogenes
retro_pabe_3505, retro_pabe_958,
Pan troglodytes ENSPTRG00000018828 ortholog_one2many 2 retrogenes
retro_ptro_2915, retro_ptro_788,
Pteropus vampyrus ENSPVAG00000010822 ortholog_one2many 1 retrogene
retro_pvam_1150,
Ictidomys tridecemlineatus ENSSTOG00000022768 possible_ortholog 2 retrogenes
retro_itri_1348, retro_itri_1635,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_303 84.00 99.60
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2. retro_sscr_450 83.13 66.00
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Download FASTA sequences of all ENSSSCG00000025312 retrocopies