RetrogeneDB ID: | retro_mmul_1137 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 15:22276219..22277154(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000009812 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCD2 | ||
Ensembl ID: | ENSMMUG00000019916 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.79 % |
Parental protein coverage: | 90.41 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GRPAWLGAAGLPGPRALACALCGRPLSFLLQVYAPLPG-RADAFHRGIFLFCCREPPCCAGLRVFRNQLP |
GR.A.....G.....ALACALC.R.LSFLLQ.YA.L...RADAFHRGIFLF.CREPPCCAGLRVFRNQLP | |
Retrocopy | GRAAGVAGRGQAADQALACALCSRLLSFLLQMYALLCA<RADAFHRGIFLFHCREPPCCAGLRVFRNQLP |
Parental | RKNDFYSYEPPSENPPPETGESVCLQLKSGAHLCRVCGCLGPKTCSRCHKAYYCSKEHQTLDWRLGHKQT |
RKNDFYSYEPPSENP.PETG.SVCLQLKS.A.LCRVCGCLGPKTCSRCHKAYYCSKEHQ.LD..L..KQ. | |
Retrocopy | RKNDFYSYEPPSENPSPETGQSVCLQLKSSAGLCRVCGCLGPKTCSRCHKAYYCSKEHQSLDQKLTYKQA |
Parental | CAQPDHFDHIIPDHNFLFPEFEIVIETEEEIMPEVVEKEDYSEITGSMGEALEEELDSMAKHESREDTIF |
C.Q.DH.DHIIPDH.FLFPEF.IVIE...EI.PEVVEKEDYSEI.GSMG.AL.EELDSMAKHESRED.IF | |
Retrocopy | CTQSDHLDHIIPDHDFLFPEFAIVIEAKDEITPEVVEKEDYSEIIGSMGDALDEELDSMAKHESREDNIF |
Parental | QKFKTQIALEPEQILRYGRGIAPIWISGENIPQEKDIPD-CPCGAKRILEFQVMPQLLNYLKADRLGKSI |
QKFKTQIA.EPEQILRYGRGIAPIWISGENIPQEKDIP....C.AKR..EFQVMPQLLNYLKA.RLGKSI | |
Retrocopy | QKFKTQIAFEPEQILRYGRGIAPIWISGENIPQEKDIPENILCDAKRMFEFQVMPQLLNYLKAGRLGKSI |
Parental | DWGILAVFTCAESCSLGTGYTEEFVWKQDVTAT |
DWGIL..FT.AESCSLGTG.TE.FVWKQDVT.T | |
Retrocopy | DWGILDIFTWAESCSLGTGSTE*FVWKQDVTDT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 16 .25 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 12 .30 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .69 RPM |
SRP007412_heart | 0 .00 RPM | 10 .36 RPM |
SRP007412_kidney | 0 .00 RPM | 16 .67 RPM |
SRP007412_liver | 0 .00 RPM | 12 .90 RPM |
SRP007412_testis | 0 .00 RPM | 1 .88 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2915 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017075 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000020634 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002920 | 1 retrocopy | |
Equus caballus | ENSECAG00000016819 | 1 retrocopy | |
Felis catus | ENSFCAG00000007037 | 2 retrocopies | |
Homo sapiens | ENSG00000071994 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000028229 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000007474 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019916 | 1 retrocopy |
retro_mmul_1137 ,
|
Mustela putorius furo | ENSMPUG00000007227 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000295 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000014002 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000017193 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018828 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000010822 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000025312 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000022768 | 2 retrocopies |