RetrogeneDB ID: | retro_fcat_833 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:49150501..49151172(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SPAG7 | ||
Ensembl ID: | ENSFCAG00000030469 | ||
Aliases: | None | ||
Description: | sperm associated antigen 7 [Source:HGNC Symbol;Acc:11216] |
Percent Identity: | 79.74 % |
Parental protein coverage: | 99.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MADLLGSILSSMEKPPSLGDQESRRKAREQAARLKKLQEQEKQQKVEFRK-RMEKEVSDFIQDSRQIKKK |
MADLLGSIL.S.EK.PSLGDQESR.KA.EQ.ARLKKLQEQEKQQKVEF.K.RMEKE.SDFIQDS.QIKKK | |
Retrocopy | MADLLGSILNSLEKSPSLGDQESRHKAQEQVARLKKLQEQEKQQKVEFHK<RMEKEMSDFIQDSGQIKKK |
Parental | FQPMNKIERSILHDVVEVAGLTSFSFGEDDECRYVMIFKKEFAPSDEELESYRRGEEWDPQKAEEKRKLK |
FQPMN.IERS.LH..VEVAGLTSFSF..DDEC.YVMIFKKEFA.SDEEL.SY..GEEW.PQ.AEEK..LK | |
Retrocopy | FQPMNEIERSTLHNMVEVAGLTSFSF-RDDECLYVMIFKKEFACSDEELDSYHYGEEWNPQEAEEKPQLK |
Parental | ELAQRQEEEAAQQGPVVVSPASDYKDKYSHLIGKGAAKD-AAHMLQANKTYGCVPVANKRDTRSIEEAMN |
ELAQ.Q.EEAA.QGPV..SPASD.KDKYS.LIGK.AAKD...HMLQANKTY.CVP.ANKRD..SI.EAMN | |
Retrocopy | ELAQWQ-EEAA*QGPVMGSPASDNKDKYSRLIGKAAAKDVTGHMLQANKTYSCVPMANKRDMCSIKEAMN |
Parental | EIRAKKRLRQSGEELPP |
EI.AKK...QS.EELPP | |
Retrocopy | EIQAKKDPQQSREELPP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 13 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .28 RPM |
SRP017611_liver | 0 .00 RPM | 5 .76 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006299 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000015761 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000011669 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000020098 | 1 retrocopy | |
Felis catus | ENSFCAG00000030469 | 1 retrocopy |
retro_fcat_833 ,
|
Macropus eugenii | ENSMEUG00000007933 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000014031 | 1 retrocopy | |
Mus musculus | ENSMUSG00000018287 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001108 | 1 retrocopy |