RetrogeneDB ID: retro_mluc_1561

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429862:2217890..2218561(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000028337
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SPAG7
• Ensembl ID: ENSMLUG00000014031
• Aliases: None
• Description: None

Sequence

>retro_mluc_1561
ATGGCGGACCTACTGGGCTCCATCCTGAGCTCCATGGAAAAGCCACCAGCCTCAGTGACCAGGAAACTCGGTGCAGGGCC
GAGAGCAGGCTGCCCACCTGAAGAAACTACAGGAGCAACAGAAACAACAAAAAGTGGAGTTCCGTAAAAGGATGGAGAAA
GAGGTGTCTGATTTCATCCAAGACAGTGGGCAGATCAAGAAAAAGTTTCAGCTGATGAACAAGATAGAGAGAAGCATACT
ATACAATGTGGTGGAAGTGGCTGGCCGGCATCCTTCAGGGAAGGTGATGAATGTTGCTATGTCATGATCTTCAAAAAGGA
GTGTGCACCCTCAGATGAAGAGCTGGACTCCTACCATCATGGAGAGGAGTGGGACCCCCAGAAGGCTGAGGAGAAACAAA
AGCTGAAGGAGTTGGCCCAGAGGCAGGAGGAGGAGGCAGTTCAGCAGGAACCTGTGATGGTGAGCCCCACCAGTGACTAC
AAGGACAAGTACAGCCACCTTATCGGCAAGGGGGCAACCAAGGATACAGCCCATATGCTACAGACCAACAAGATGTATGC
TGTGTGCCCGTGGCCAAAAAGAGGGACACATGCTCCATTGAAGAGGCTATGAATAAGATCCGAGCCAAGAAGCATCTGCG
GCAGAGTGGGGAAGAGTTGCCACCTACCTCC

Alignment

ORF - retro_mluc_1561 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.71 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  MADLLGSILSSMEKPP-SLSDQETRRRA-REQAARLKKLQEQDKQQKVEFRKRMEKEVSDFIQDSGQIKK
          MADLLGSILSSMEKPP.SLSDQETR.RA.REQAA.LKKLQEQ.KQQKVEFRKRMEKEVSDFIQDSGQIKK
Retrocopy MADLLGSILSSMEKPP<SLSDQETRCRA<REQAAHLKKLQEQQKQQKVEFRKRMEKEVSDFIQDSGQIKK

Parental  KFQPMNKIERSILHDVVEVAGL-TSFSFGEDDECRYVMIFKKEFAPSDEELDSYRRGEEWDPQKAEEKRK
          KFQ.MNKIERSIL..VVEVAG...SF..G..DEC.YVMIFKKE.APSDEELDSY..GEEWDPQKAEEK.K
Retrocopy KFQLMNKIERSILYNVVEVAGR<ASFREG--DECCYVMIFKKECAPSDEELDSYHHGEEWDPQKAEEKQK

Parental  LKELAQRQEEEAAQQGPVVVSPTSDYKDKYSHLIGKGAAKDAAHMLQANKTYG-CVPVANKRDTRSIEEA
          LKELAQRQEEEA.QQ.PV.VSPTSDYKDKYSHLIGKGA.KD.AHMLQ.NK.Y..CVPVA.KRDT.SIEEA
Retrocopy LKELAQRQEEEAVQQEPVMVSPTSDYKDKYSHLIGKGATKDTAHMLQTNKMYA<CVPVAKKRDTCSIEEA

Parental  MNEIRAKKRLRQSGEELPPTS
          MN.IRAKK.LRQSGEELPPTS
Retrocopy MNKIRAKKHLRQSGEELPPTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1561 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000006299	1 retrocopy	retro_amel_964,
Canis familiaris	ENSCAFG00000015761	1 retrocopy	retro_cfam_1417,
Dasypus novemcinctus	ENSDNOG00000011669	1 retrocopy	retro_dnov_1149,
Echinops telfairi	ENSETEG00000020098	1 retrocopy	retro_etel_1489,
Felis catus	ENSFCAG00000030469	1 retrocopy	retro_fcat_833,
Macropus eugenii	ENSMEUG00000007933	1 retrocopy	retro_meug_1358,
Myotis lucifugus	ENSMLUG00000014031	1 retrocopy	retro_mluc_1561 ,
Mus musculus	ENSMUSG00000018287	1 retrocopy	retro_mmus_2553,
Oryctolagus cuniculus	ENSOCUG00000001108	1 retrocopy	retro_ocun_1103,