RetrogeneDB ID:

retro_fcat_925

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:B3:104033362..104033634(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS14
Ensembl ID:ENSFCAG00000011085
Aliases:None
Description:Ribosomal protein S14 [Source:UniProtKB/TrEMBL;Acc:Q66TU2]


Retrocopy-Parental alignment summary:






>retro_fcat_925
GGTGGGATGAAGGTGAGGCTGACCAAGATGCATCCTCTCCCTACGCTGCCATGTTGGCTGCCCAGGATGTAGCCCAGAGG
GTGCAAGGAGCTGAGCATCACTGTACTCCACATCAAACTCCAGGCCACAGGAGGAAATAGAACCAAGACCCCTGAACCTA
GGCCCAGTCAGTCCTCAGAGCCCTTGCCCACTCAGGAATGAAGATCAGGAGGATTGAGAATGTCACCCCTATCCCCTCCA
ATAGCACCCACAAGAATAGGGGTCATTGTGGT

ORF - retro_fcat_925 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.6 %
Parental protein coverage: 56.88 %
Number of stop codons detected: 0
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalGGMKVK-ADRDESSPYAAMLAAQDVAQR-CKELGITALHIKLRATGGNRTKTPGPG-AQSALRALARSGM
GGMKV..AD.D.SSPYAAMLAAQDVAQR.CKEL.IT.LHIKL.ATGGNRTKTP.P..AQS.LRALA.SGM
RetrocopyGGMKVR<ADQDASSPYAAMLAAQDVAQR>CKELSITVLHIKLQATGGNRTKTPEPR<AQSVLRALAHSGM
ParentalKIGRIEDVTPIPSDSTRRKGGRRG
KI.RIE.VTPIPS.ST....G..G
RetrocopyKIRRIENVTPIPSNSTHKNRGHCG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 80 .91 RPM
SRP017611_kidney 0 .00 RPM 275 .99 RPM
SRP017611_liver 0 .00 RPM 122 .93 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_925 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_925 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 40 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000046442 retrocopies
Bos taurus ENSBTAG000000085702 retrocopies
Canis familiaris ENSCAFG000000180942 retrocopies
Callithrix jacchus ENSCJAG000000209811 retrocopy
Cavia porcellus ENSCPOG000000244082 retrocopies
Felis catus ENSFCAG00000011085 5 retrocopies
Latimeria chalumnae ENSLACG000000161641 retrocopy
Loxodonta africana ENSLAFG000000311952 retrocopies
Myotis lucifugus ENSMLUG000000132794 retrocopies
Macaca mulatta ENSMMUG000000028485 retrocopies
Mustela putorius furoENSMPUG000000137761 retrocopy
Nomascus leucogenys ENSNLEG000000103661 retrocopy
Oryctolagus cuniculus ENSOCUG000000115091 retrocopy
Otolemur garnettii ENSOGAG000000007211 retrocopy
Rattus norvegicus ENSRNOG0000001877410 retrocopies



Copyright © RetrogeneDB 2014-2017