RetrogeneDB ID: | retro_fcat_857 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | B3:101855110..101855566(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS14 | ||
Ensembl ID: | ENSFCAG00000011085 | ||
Aliases: | None | ||
Description: | Ribosomal protein S14 [Source:UniProtKB/TrEMBL;Acc:Q66TU2] |
Percent Identity: | 90.79 % |
Parental protein coverage: | 95. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | EMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDES |
EMAPRK.KEKKEEQV.SLGPQVAEGENVFGVCHIFASF.DTFVHVTDLSGKETICRVTGGMK.KAD.DES | |
Retrocopy | EMAPRKRKEKKEEQVMSLGPQVAEGENVFGVCHIFASFSDTFVHVTDLSGKETICRVTGGMKMKAD*DES |
Parental | SPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDS |
SPYAAMLAAQDVAQRCKELGIT..HIKLRATGG.RTKTP.PGAQSALRALARSGMKIG.IEDVTPIPSD. | |
Retrocopy | SPYAAMLAAQDVAQRCKELGITTVHIKLRATGGSRTKTPRPGAQSALRALARSGMKIGWIEDVTPIPSDN |
Parental | TRRKGGRRGRRL |
T.RKGGR.GR.L | |
Retrocopy | TCRKGGRCGRHL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 80 .91 RPM |
SRP017611_kidney | 0 .31 RPM | 275 .99 RPM |
SRP017611_liver | 0 .51 RPM | 122 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004644 | 2 retrocopies | |
Bos taurus | ENSBTAG00000008570 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000018094 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000020981 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000024408 | 2 retrocopies | |
Felis catus | ENSFCAG00000011085 | 5 retrocopies | |
Latimeria chalumnae | ENSLACG00000016164 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000031195 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000013279 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000002848 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000013776 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000010366 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011509 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000721 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018774 | 10 retrocopies |