RetrogeneDB ID: | retro_rnor_1759 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 20:25222080..25222460(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps14 | ||
Ensembl ID: | ENSRNOG00000018774 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S14 [Source:RefSeq peptide;Acc:NP_073163] |
Percent Identity: | 82.03 % |
Parental protein coverage: | 84.11 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESS |
MAP.KGKEKKEE.VISLG.QVAEGE.VFGVCHIFASF.DTFV.V.DLS.KETIC.VTGGMKVKAD..E.S | |
Retrocopy | MAPHKGKEKKEE*VISLGAQVAEGESVFGVCHIFASFSDTFVPVADLSSKETICQVTGGMKVKADPEETS |
Parental | PYAAMLAAQDVAQRCKELGITALHI-KLRATGGNRTKTPGPGAQSALRALARSGMKIG |
P.AAMLAAQDV.QR.KELG.TALHI..L.ATGGNRTKTPGPGAQSALRAL..SG..IG | |
Retrocopy | PHAAMLAAQDVVQRYKELGTTALHI<QLQATGGNRTKTPGPGAQSALRALVGSGIMIG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 29 .05 RPM |
SRP017611_kidney | 0 .00 RPM | 37 .61 RPM |
SRP017611_liver | 0 .00 RPM | 28 .44 RPM |