RetrogeneDB ID: | retro_ggor_1229 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 16:24142472..24143399(+) | ||
Located in intron of: | ENSGGOG00000004218 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000216671 | ||
Ensembl ID: | ENSGGOG00000008136 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.57 % |
Parental protein coverage: | 92.56 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | TAVEPAQSDFGAREGHDLQHISDQQMPKNFASDRPRESTLFLRKYQMSAVRNEKRSSSHLYYIPACHLDR |
TAVEPAQSD.GAR.GHDLQHISDQ.MPK.FASD.PRESTLFLRKYQMS....EKR.SSHL.YIP..HLDR | |
Retrocopy | TAVEPAQSDLGARKGHDLQHISDQEMPKYFASDHPRESTLFLRKYQMSV--QEKRRSSHL*YIPPWHLDR |
Parental | KYSSCSTILLDNSTASQPDLRHTLESVALAIYYNIKHSYANRSLAIFEEPIHPLSQEKLPGKSFKHDPKH |
KY.SC.TILLDN.T.SQPDL.HTLESV..AIYYNIKH.YANRSLAIF..P.HPLSQEK.PGKSF.HDPK. | |
Retrocopy | KYTSCYTILLDNRTVSQPDL*HTLESVT*AIYYNIKHRYANRSLAIFDKPVHPLSQEKFPGKSFEHDPKR |
Parental | NCIFRYFCTLFQVIKLTAPCAIVALVYIERLLTSANIDLCPTNWKKIVLGTMLLASKVWRNRGLWSVDDS |
NC.FRYFCTLFQVIKLTAPCAIVALVYIERLLT...I.LCPTNWKKIVLG.MLLASKVWRN.GLWSVDDS | |
Retrocopy | NCTFRYFCTLFQVIKLTAPCAIVALVYIERLLTNGSIALCPTNWKKIVLGAMLLASKVWRNHGLWSVDDS |
Parental | QNPKDTAVENMSKMEKCFLELLEFNIHVSASVYAKYYFDLHALANDHDLYFLFSFLHKDKAQKLEAMSRL |
QNPKD.AVENMSKMEKCFLELL.FNIHVSASVYA.YYFDL.ALAND.DLYFLFSFLHKDKAQKLEA.S.. | |
Retrocopy | QNPKDIAVENMSKMEKCFLELLGFNIHVSASVYARYYFDLCALANDRDLYFLFSFLHKDKAQKLEAVSWP |
Parental | CEYKDLHQDAAALKRVISMNFIGIGCSNAIL |
CEYKDLHQ.AAA..R.ISMNFIGI.C.NAIL | |
Retrocopy | CEYKDLHQHAAAITRAISMNFIGIRCTNAIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .59 RPM | 0 .00 RPM |
SRP007412_heart | 0 .06 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .29 RPM | 0 .00 RPM |
SRP007412_liver | 0 .13 RPM | 0 .00 RPM |
SRP007412_testis | 1 .14 RPM | 5 .28 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1629 |
Pongo abelii | retro_pabe_1345 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011445 | 1 retrocopy | |
Homo sapiens | ENSG00000163249 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000008136 | 1 retrocopy |
retro_ggor_1229 ,
|
Mus musculus | ENSMUSG00000070871 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008072 | 1 retrocopy |