RetrogeneDB ID:

retro_ggor_1229

Retrocopy
location
Organism:Gorilla (Gorilla gorilla)
Coordinates:16:24142472..24143399(+)
Located in intron of:ENSGGOG00000004218
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ENSG00000216671
Ensembl ID:ENSGGOG00000008136
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_ggor_1229
ACTGCTGTGGAGCCTGCCCAGTCGGATTTAGGAGCCCGCAAGGGCCATGACCTGCAGCACATCAGCGACCAGGAGATGCC
CAAATATTTTGCTTCTGACCATCCAAGGGAAAGTACACTTTTTTTGAGAAAATATCAAATGAGTGTGCAAGAAAAGAGGA
GGAGCTCTCATCTATAGTATATACCCCCATGGCATCTTGATAGAAAATACACCTCGTGTTACACCATATTGCTAGATAAC
AGAACAGTCAGCCAGCCTGATCTTTGACACACATTAGAAAGTGTGACTTAGGCAATATATTACAACATAAAGCACAGATA
CGCAAATAGATCTCTGGCTATTTTTGACAAGCCAGTACACCCACTTTCACAAGAGAAGTTTCCAGGGAAATCCTTCGAGC
ATGATCCCAAACGCAACTGTACTTTCAGATATTTCTGTACTCTTTTTCAAGTCATAAAACTAACAGCTCCATGTGCAATC
GTAGCTTTGGTGTACATCGAACGACTTTTAACTAATGGTAGCATCGCTCTTTGTCCTACTAATTGGAAAAAGATTGTGCT
CGGAGCCATGCTTCTTGCCTCCAAGGTTTGGAGAAATCATGGTCTGTGGAGTGTGGATGACAGCCAGAATCCCAAGGACA
TTGCAGTTGAGAACATGAGCAAGATGGAGAAGTGTTTTTTGGAGCTACTTGGGTTTAATATTCATGTGTCTGCCAGTGTT
TATGCAAGATATTACTTCGACCTGTGTGCCTTGGCAAATGACCGTGACCTGTATTTTCTATTTAGTTTTCTTCACAAAGA
TAAAGCACAGAAACTGGAGGCTGTGTCATGGCCGTGTGAATACAAAGACTTGCATCAACATGCCGCTGCTATAACAAGGG
CTATCAGCATGAATTTCATTGGTATTCGGTGCACTAATGCCATCTTA

ORF - retro_ggor_1229 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.57 %
Parental protein coverage: 92.56 %
Number of stop codons detected: 3
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTAVEPAQSDFGAREGHDLQHISDQQMPKNFASDRPRESTLFLRKYQMSAVRNEKRSSSHLYYIPACHLDR
TAVEPAQSD.GAR.GHDLQHISDQ.MPK.FASD.PRESTLFLRKYQMS....EKR.SSHL.YIP..HLDR
RetrocopyTAVEPAQSDLGARKGHDLQHISDQEMPKYFASDHPRESTLFLRKYQMSV--QEKRRSSHL*YIPPWHLDR
ParentalKYSSCSTILLDNSTASQPDLRHTLESVALAIYYNIKHSYANRSLAIFEEPIHPLSQEKLPGKSFKHDPKH
KY.SC.TILLDN.T.SQPDL.HTLESV..AIYYNIKH.YANRSLAIF..P.HPLSQEK.PGKSF.HDPK.
RetrocopyKYTSCYTILLDNRTVSQPDL*HTLESVT*AIYYNIKHRYANRSLAIFDKPVHPLSQEKFPGKSFEHDPKR
ParentalNCIFRYFCTLFQVIKLTAPCAIVALVYIERLLTSANIDLCPTNWKKIVLGTMLLASKVWRNRGLWSVDDS
NC.FRYFCTLFQVIKLTAPCAIVALVYIERLLT...I.LCPTNWKKIVLG.MLLASKVWRN.GLWSVDDS
RetrocopyNCTFRYFCTLFQVIKLTAPCAIVALVYIERLLTNGSIALCPTNWKKIVLGAMLLASKVWRNHGLWSVDDS
ParentalQNPKDTAVENMSKMEKCFLELLEFNIHVSASVYAKYYFDLHALANDHDLYFLFSFLHKDKAQKLEAMSRL
QNPKD.AVENMSKMEKCFLELL.FNIHVSASVYA.YYFDL.ALAND.DLYFLFSFLHKDKAQKLEA.S..
RetrocopyQNPKDIAVENMSKMEKCFLELLGFNIHVSASVYARYYFDLCALANDRDLYFLFSFLHKDKAQKLEAVSWP
ParentalCEYKDLHQDAAALKRVISMNFIGIGCSNAIL
CEYKDLHQ.AAA..R.ISMNFIGI.C.NAIL
RetrocopyCEYKDLHQHAAAITRAISMNFIGIRCTNAIL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 0 .24 RPM 0 .00 RPM
SRP007412_cerebellum 0 .59 RPM 0 .00 RPM
SRP007412_heart 0 .06 RPM 0 .00 RPM
SRP007412_kidney 0 .29 RPM 0 .00 RPM
SRP007412_liver 0 .13 RPM 0 .00 RPM
SRP007412_testis 1 .14 RPM 5 .28 RPM
Gorilla gorilla was not studied using ChIP-Seq data.
Gorilla gorilla was not studied using EST data.
Gorilla gorilla was not studied using FANTOM5 data.
retro_ggor_1229 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ggor_1229 has 2 orthologous retrocopies within eutheria group .

Species RetrogeneDB ID
Homo sapiens retro_hsap_1629
Pongo abelii retro_pabe_1345

Parental genes homology:
Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000114451 retrocopy
Homo sapiens ENSG000001632493 retrocopies
Gorilla gorilla ENSGGOG00000008136 1 retrocopy
retro_ggor_1229 ,
Mus musculus ENSMUSG000000708711 retrocopy
Pan troglodytes ENSPTRG000000080721 retrocopy



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