RetrogeneDB ID: | retro_hsap_1984 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 19:21934075..21934718(+) | ||
Located in intron of: | ENSG00000197020 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000269845 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNYL1 | ||
Ensembl ID: | ENSG00000163249 | ||
Aliases: | None | ||
Description: | cyclin Y-like 1 [Source:HGNC Symbol;Acc:26868] |
Percent Identity: | 92.13 % |
Parental protein coverage: | 74.39 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | VTLAIYYHIKNRDANRSLDIFDERSHPLTREKVPEEYFKHDPEHKFIYRFVRTLFSAAQLTAECAIVTLV |
VTL.IYYHIKNRDANRSLDIFDERSHPLTREKVP.E.FKHDPEHKFIYRFV.TLFSAAQLTAECA.VTLV | |
Retrocopy | VTLEIYYHIKNRDANRSLDIFDERSHPLTREKVPQE*FKHDPEHKFIYRFVHTLFSAAQLTAECATVTLV |
Parental | YLERLLTYAEIDICPTNWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFLELLQFNI |
YLERLLTYAEIDICPTN.KRIVLGA.LLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHF.ELLQFNI | |
Retrocopy | YLERLLTYAEIDICPTN*KRIVLGATLLASKVWDDQAVWNVDYCQILKDITVEDMNEMERHFSELLQFNI |
Parental | NVPASVYAKYYFDLRSLADDNNLNFLFAPLSKERAQNLEAISRLCEDKDLCRAAMRRSFSAD-NFIGIQR |
NVPASVYAK.Y.D.RSLADD..LNFLFAPLSKERAQNLEAISRLCEDKDLC.AA.RRSFSAD.NFIGIQ. | |
Retrocopy | NVPASVYAKHYLDHRSLADD-HLNFLFAPLSKERAQNLEAISRLCEDKDLCGAAVRRSFSAD>NFIGIQH |
Parental | SKAILS |
SKAILS | |
Retrocopy | SKAILS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .14 RPM | 28 .88 RPM |
bodymap2_adrenal | 0 .41 RPM | 24 .99 RPM |
bodymap2_brain | 0 .09 RPM | 13 .71 RPM |
bodymap2_breast | 0 .08 RPM | 50 .37 RPM |
bodymap2_colon | 0 .00 RPM | 10 .96 RPM |
bodymap2_heart | 0 .07 RPM | 15 .25 RPM |
bodymap2_kidney | 0 .00 RPM | 40 .49 RPM |
bodymap2_liver | 0 .00 RPM | 25 .26 RPM |
bodymap2_lung | 0 .00 RPM | 19 .57 RPM |
bodymap2_lymph_node | 0 .00 RPM | 13 .96 RPM |
bodymap2_ovary | 0 .15 RPM | 23 .94 RPM |
bodymap2_prostate | 0 .00 RPM | 8 .94 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 4 .67 RPM |
bodymap2_testis | 0 .77 RPM | 33 .58 RPM |
bodymap2_thyroid | 0 .08 RPM | 26 .76 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 28 .80 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1322 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000001008 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002901 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000011445 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000034702 | 1 retrocopy | |
Homo sapiens | ENSG00000163249 | 3 retrocopies |
retro_hsap_1629, retro_hsap_1984 , retro_hsap_4845,
|
Gorilla gorilla | ENSGGOG00000008136 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000020211 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000007131 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000013118 | 3 retrocopies | |
Pan troglodytes | ENSPTRG00000008072 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .09 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .16 RPM |
CEU_NA12004 | 0 .08 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .12 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .05 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .06 RPM |
FIN_HG00183 | 0 .08 RPM |
FIN_HG00277 | 0 .11 RPM |
FIN_HG00315 | 0 .06 RPM |
FIN_HG00321 | 0 .21 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .03 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .05 RPM |
FIN_HG00378 | 0 .04 RPM |
GBR_HG00099 | 0 .06 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .03 RPM |
GBR_HG00133 | 0 .10 RPM |
GBR_HG00134 | 0 .09 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .11 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .12 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .10 RPM |
TSI_NA20538 | 0 .09 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .12 RPM |
TSI_NA20771 | 0 .09 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .12 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .10 RPM |
YRI_NA18916 | 0 .13 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .08 RPM |
YRI_NA19118 | 0 .04 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .10 RPM |
YRI_NA19223 | 0 .14 RPM |