Parental gene: | CCNYL1, ENSG00000163249 |
| Aliases: | None |
| Description: | cyclin Y-like 1 [Source:HGNC Symbol;Acc:26868] |
| Organism: | Human (Homo sapiens) |
| Coordinates: | 2:208576263..208626563(+) |
>ENSG00000163249
ATGGGGAACACGCTGACCTGTTGCGTGTCCCCCAATGCCAGCCCCAAGCTGGGCCGGCGCGCGGGGTCGGCGGAGCTGTA
CTGCGCGTCCGACATCTACGAGGCGGTGTCCGGGGACGCGGTGGCGGTAGCGCCCGCTGTGGTGGAGCCTGCCGAGTTGG
ATTTCGGAGAGGGCGAGGGCCACCACCTGCAGCACATCAGCGACCGCGAGATGCCCGAAGATTTAGCTTTGGAGTCAAAC
CCTTCTGACCATCCAAGGGCAAGCACAATTTTCCTGAGCAAATCTCAAACGGATGTGCGAGAAAAGAGGAAGAGCAACCA
TTTGAACCATTGTGACCTTAGCAATATATTACCACATAAAGAACAGCGAGAAAAAGTTCCAGAGGAATACTTTAAGCATG
ATCCTGAGCACAAATTTATTTACAGATTTGTTCGTACTCTTTTTAGTGCTGCACAGCTAACAGCTGAATGTGCAATAGTA
ACTTTGGTTTACTTAGAAAGGCTTTTAACTTATGCTGAAATCGACATTTGTCCCACCAACTGGAAAAGGATTGTTCTGGG
AGCCATTCTTCTTGCCTCCAAGGTTTGGGACGATCAGGCTGTATGGAATGTGGACTACTGCCAGATCCTCAAGGACATTA
CAGTTGAGGACATGAATGAAATGGAAAGGCATTTTCTGGAGCTTCTTCAGTTTAATATTAATGTTCCTGCCAGTGTTTAT
GCCAAATACTACTTTGACCTTCGCTCCTTAGCAGATGACAACAACCTGAATTTTCTATTTGCTCCTCTTAGCAAAGAAAG
AGCACAGAACCTAGAGGCTATTTCTAGATTGTGTGAAGACAAAGACTTGTGTAGAGCCGCTATGAGAAGGTCTTTCAGTG
CTGATAACTTCATTGGTATTCAGCGCTCTAAAGCCATCCTCTCTTAA
ATGGGGAACACGCTGACCTGTTGCGTGTCCCCCAATGCCAGCCCCAAGCTGGGCCGGCGCGCGGGGTCGGCGGAGCTGTA
CTGCGCGTCCGACATCTACGAGGCGGTGTCCGGGGACGCGGTGGCGGTAGCGCCCGCTGTGGTGGAGCCTGCCGAGTTGG
ATTTCGGAGAGGGCGAGGGCCACCACCTGCAGCACATCAGCGACCGCGAGATGCCCGAAGATTTAGCTTTGGAGTCAAAC
CCTTCTGACCATCCAAGGGCAAGCACAATTTTCCTGAGCAAATCTCAAACGGATGTGCGAGAAAAGAGGAAGAGCAACCA
TTTGAACCATTGTGACCTTAGCAATATATTACCACATAAAGAACAGCGAGAAAAAGTTCCAGAGGAATACTTTAAGCATG
ATCCTGAGCACAAATTTATTTACAGATTTGTTCGTACTCTTTTTAGTGCTGCACAGCTAACAGCTGAATGTGCAATAGTA
ACTTTGGTTTACTTAGAAAGGCTTTTAACTTATGCTGAAATCGACATTTGTCCCACCAACTGGAAAAGGATTGTTCTGGG
AGCCATTCTTCTTGCCTCCAAGGTTTGGGACGATCAGGCTGTATGGAATGTGGACTACTGCCAGATCCTCAAGGACATTA
CAGTTGAGGACATGAATGAAATGGAAAGGCATTTTCTGGAGCTTCTTCAGTTTAATATTAATGTTCCTGCCAGTGTTTAT
GCCAAATACTACTTTGACCTTCGCTCCTTAGCAGATGACAACAACCTGAATTTTCTATTTGCTCCTCTTAGCAAAGAAAG
AGCACAGAACCTAGAGGCTATTTCTAGATTGTGTGAAGACAAAGACTTGTGTAGAGCCGCTATGAGAAGGTCTTTCAGTG
CTGATAACTTCATTGGTATTCAGCGCTCTAAAGCCATCCTCTCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| bodymap2_liver | 25 .26 RPM |
| bodymap2_lung | 19 .57 RPM |
| bodymap2_breast | 50 .37 RPM |
| bodymap2_adipose | 28 .88 RPM |
| bodymap2_adrenal | 24 .99 RPM |
| bodymap2_skeletal_muscle | 4 .67 RPM |
| bodymap2_thyroid | 26 .76 RPM |
| bodymap2_prostate | 8 .94 RPM |
| bodymap2_colon | 10 .96 RPM |
| bodymap2_testis | 33 .58 RPM |
| bodymap2_brain | 13 .71 RPM |
| bodymap2_heart | 15 .25 RPM |
| bodymap2_white_blood_cells | 28 .80 RPM |
| bodymap2_lymph_node | 13 .96 RPM |
| bodymap2_ovary | 23 .94 RPM |
| bodymap2_kidney | 40 .49 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000001008 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000002901 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000011445 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000034702 | possible_ortholog | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000008136 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000020211 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000007131 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000013118 | possible_ortholog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000008072 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_hsap_1629 | 57.14 | 95.85 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_hsap_1984 | 92.13 | 74.39 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_hsap_4845 | 87.28 | 96.10 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSG00000163249 retrocopies