RetrogeneDB ID: retro_ggor_136

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: 4:55009207..55009369(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSGGOG00000023237
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSGGOG00000026329
• Aliases: None
• Description: None

Sequence

>retro_ggor_136
ATAGAACGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAACCGAATGGAATCGAATGGGTTGGTATGGA
ATGGAATGGAAGAGAATGGAATCAACCCGAGTGGAACGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGAATGGA
AT

Alignment

ORF - retro_ggor_136 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 72.22 %
• Parental protein coverage: 98.18 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEWNGINRSTMEWNGMEWNGMEWNRIEWNGMEWNQPEWNGIQWNGMEWNGMEWN
          .E.NG.....MEWNGME.NG.EW...EWNG.EWNQPEWNG..WNGMEWNGMEWN
Retrocopy IERNGMEWNGMEWNGMEPNGIEWVGMEWNGREWNQPEWNGMEWNGMEWNGMEWN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_136 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_136 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000024231	2 retrocopies	retro_ggor_1586, retro_ggor_3074,
Gorilla gorilla	ENSGGOG00000026329	1 retrocopy	retro_ggor_136 ,