RetrogeneDB ID: retro_ggor_3074

Retrocopy location

• Organism: Gorilla (Gorilla gorilla)
• Coordinates: unplaced:48404512..48404689(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ENSG00000234412
• Ensembl ID: ENSGGOG00000024231
• Aliases: None
• Description: None

Sequence

>retro_ggor_3074
ATCGAATGGAATGGAATTGAATGGAATCCAAAGGAATAGAATGGAATGTAGTGTAATGGAAAGATGTCGAATGGAATGGA
ATGGAACCGACTCGAATGGACTGAACTTGAATGGAATGGTCTCGAAAGGGATGGACTGGTGTGGAATGGACTCGAATGGA
ATGGAAACTTATGGAAC

Alignment

ORF - retro_ggor_3074 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.71 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEWNGMEWNSKEWNGIESNGMEWNGMEWNGMEWNGIEWNGLEWN---WNGLEWNGMEWN
          .EWNG.EWN.KE.NG...NG...NGMEWN..EW...EWNGLE.....WNGLEWNG..WN
Retrocopy IEWNGIEWNPKE*NGM*CNGKMSNGMEWNRLEWTELEWNGLERDGLVWNGLEWNGNLWN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Expression validation based on RNA-Seq data:

Library	Retrocopy expression	Parental gene expression
SRP007412_brain_prefrontal_cortex	0.00 RPM	0.00 RPM
SRP007412_cerebellum	0.00 RPM	0.00 RPM
SRP007412_heart	0.00 RPM	0.00 RPM
SRP007412_kidney	0.00 RPM	0.00 RPM
SRP007412_liver	0.00 RPM	0.00 RPM
SRP007412_testis	0.00 RPM	0.00 RPM

ChIP-Seq

Gorilla gorilla was not studied using ChIP-Seq data.

EST

Gorilla gorilla was not studied using EST data.

TSS

Gorilla gorilla was not studied using FANTOM5 data.

Lab

retro_ggor_3074 was not experimentally validated.

Homology

Retrocopy orthology:

Retrocopy retro_ggor_3074 has 0 orthologous retrocopies within eutheria group .

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000024231	2 retrocopies	retro_ggor_1586, retro_ggor_3074 ,
Gorilla gorilla	ENSGGOG00000026329	1 retrocopy	retro_ggor_136,